Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0253 ATGGAGGTAATCGCTGAAGATGGGAAAGTTAAGTCTCGGGAAGTGAGCGAATCGAAGGGGAAGAAGAAGCAGAAGAACAACAAGGAACAAGTTGAAACTGTAGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGCAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATCAGTGGGACTAGTATTAACTATGGTAATGACTTATGTTTCCTTCAAGCTTTCCTAATTTATGATCTTTTTGTGTCAGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTCGAGATATATCTTCTACGAACACAAGTATGAGTAATGCAGAGAGTAATTCATCCACTTCCAAACTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAATTTTCATTTAATGATCTTAAGTTGGCTACAAGGAATTTCAGACCCGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCATAAAGAGTGGATGGCTGAAGTGAATTTTCTTAGTGATCTCAAACATCCCAACTTGGTCAGACTTATCGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCGCTACCTCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTTGCTTTTCTTCATGAGGAAGCAAAAAGGCCTGTGATATACCGTGATTTTAAAACATCCAACATCCTACTAGATGCCGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTTTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTAATGACTGGGCATCTTACATCAAGGAGTGATGTTTACAGTTTTGGAGTGGTTCTTCTCGAAATGCTAACTGGCAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAACATAACCTTGTGGAATGGGCACGGCCGTACTTAGGAGAGAAAAAGAGATTCTATCGTTTGATAGACCCTAGGCTTGAAGGTCATTTCTCAATCAAAGGTGCCCAAAAAGCAGTACAACTGGCTGCTCAATGCCTTAGCCGAGATCAAAAGGTCAGACCCTTGATGAGTGAAGTTGTTGAAGCCTTGAAACCTCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATACGATCCAGCCCAATGGCGAGAAATGGCTATCACGCAGGTGCAGGACCAGTTCCCAAGAACGGGCAGCAACTACGCAGCCATTCAGTCGCCAATGGTTCTCATGCTTCTCCATATCATCATCAGCAACCCCATCCATCTCCAAAACCCACTGAGAAATCCTAA 1521 43.33 MEVIAEDGKVKSREVSESKGKKKQKNNKEQVETVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYGNDLCFLQAFLIYDLFVSAESKSTADSSRDQPTPRDISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRSSPMARNGYHAGAGPVPKNGQQLRSHSVANGSHASPYHHQQPHPSPKPTEKS 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2197519 2203885 + Maker00025844 Lcy7g0253 637085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0253 506 MobiDBLite consensus disorder prediction 474 493 - -
Lcy7g0253 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g0253 506 FunFam Probable serine/threonine-protein kinase PBL8 235 450 - -
Lcy7g0253 506 MobiDBLite consensus disorder prediction 91 121 - -
Lcy7g0253 506 MobiDBLite consensus disorder prediction 1 31 - -
Lcy7g0253 506 ProSitePatterns Protein kinases ATP-binding region signature. 155 187 IPR017441 GO:0005524(InterPro)
Lcy7g0253 506 SMART serkin_6 149 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0253 506 Pfam Protein tyrosine and serine/threonine kinase 153 429 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g0253 506 SUPERFAMILY Protein kinase-like (PK-like) 125 429 IPR011009 -
Lcy7g0253 506 Gene3D Phosphorylase Kinase; domain 1 107 234 - -
Lcy7g0253 506 MobiDBLite consensus disorder prediction 91 125 - -
Lcy7g0253 506 Gene3D Transferase(Phosphotransferase) domain 1 235 451 - -
Lcy7g0253 506 MobiDBLite consensus disorder prediction 458 506 - -
Lcy7g0253 506 FunFam Serine/threonine-protein kinase BIK1 116 234 - -
Lcy7g0253 506 PANTHER OS01G0588500 PROTEIN-RELATED 115 433 IPR050823 -
Lcy7g0253 506 ProSiteProfiles Protein kinase domain profile. 149 435 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0253 506 CDD STKc_IRAK 155 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1436 Lcy-Chr1:13938324 Lcy7g0253 Lcy-Chr7:2197519 1.54E-154 dispersed
Lcy1g1621 Lcy-Chr1:16553182 Lcy7g0253 Lcy-Chr7:2197519 4.93E-61 dispersed
Lcy2g0710 Lcy-Chr2:6268671 Lcy7g0253 Lcy-Chr7:2197519 4.94E-174 dispersed
Lcy4g1564 Lcy-Chr4:39530662 Lcy7g0253 Lcy-Chr7:2197519 3.33E-135 dispersed
Lcy4g2085 Lcy-Chr4:47399149 Lcy7g0253 Lcy-Chr7:2197519 2.06E-168 dispersed
Lcy6g0760 Lcy-Chr6:7476824 Lcy7g0253 Lcy-Chr7:2197519 2.01E-124 dispersed
Lcy6g2356 Lcy-Chr6:48338217 Lcy7g0253 Lcy-Chr7:2197519 4.47E-125 dispersed
Lcy7g0253 Lcy-Chr7:2197519 Lcy8g2185 Lcy-Chr8:47922481 6.69E-133 dispersed
Lcy10g1988 Lcy-Chr10:43966899 Lcy7g0253 Lcy-Chr7:2197519 1.59E-252 wgd
Lcy13g2302 Lcy-Chr13:41904341 Lcy7g0253 Lcy-Chr7:2197519 1.56E-105 wgd
Lcy5g2295 Lcy-Chr5:45917210 Lcy7g0253 Lcy-Chr7:2197519 1.38E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66064 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0253 - - - 0.0