Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g0255 | ATGGTACCATTAACGAACAGAAATATGATTCGGCTGCTGATAACATTGTCATTGGTGGCTGTCGCATTTGCTGACATTGCAAACTTCGATGACTACTGGAAAGCACGCGCCGCCGAGGCCGAACAAGCCGCCGTCGAGGCCTTTGATCCCAATCCTGACAACGTCACCGACTCCTTGAACGCCGAAGTTGGCAAGGAATGGGGTGGAAGCAACAGTACGAGGAGGGGTTTGAAGAAATACACAGGGCCATGCAGAGCCACAAATCCCATCGATAGGTGCTGGAGATGCGACCCAAATTGGGCCAACGACCGTAAGAAGCTGGCCACTTGCGTTCTGGGTTTCGGCCGCAAGACCACCGGCGGCAAGTTGGGTCCATACTACGTGGTGAACGACTCGTCGGACTCGGACCTTATGAACCCAAAACCTGGGACCCTGCGTCATGCCGTGATCCAAAAAGGGCCGCTCTGGATAACCTTTTCTACCAACATGGCCATTAGGCTCAATCAAGAGCTCATTGTGACCAGCGACAAGACCATCGATGCTAGAGGGGCCAATGTTCAGATTGCATATGGGGCTGGCATTACTCTTCAGTACGTCAAGAATGTCATCATCCATGGCCTTCGTATTCATAACATCGTCATGGGTACTGGTGGGATGATCAGAGACGCTGTCGACCATGTGGGTTTGAGGACAATGAGCGATGGCGACGGCATTTCCATCTTCGGTTCCTCCAATATTTGGATTGACCATGTTTCCATGTCCAGATGTCATGACGGTCTCATCGATGCCATTATGGGATCCACTGCCATCACCATCTCCAATTGCCACTTTACTCACCACAATGACGTGATGTTGTTCGGAGCGAGTGACGGCTACTCAAATGATCAAATAATGCAAGTGACGGTGGCATTCAACCACTTCGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATGTTGTCAACAATGACTACACTCATTGGCTTATGTATGCCATCGGTGGTAGCCAACATCCCACCATTATCAGCCAGGGCAATCGCTTCATTGCTCCTCCCAATGGATATGCTAAAGAGGTGACGAAGAGAGAATACTCGCCTGAGAATGTGTGGAAGACCTGGACATGGAGATCAGAGGGAGATTTGATGATGAACGGAGCATTCTTTACTACCTCAGGTGATCTAAGAAAGAGAAGACCCTACTCAAGAATGGATATGATCTCATATAAGCCAGGGACGTACGTTACGAGAATGACACGTTTCGCAGGCGCACTCGCCTGCTTCATCGGCCGACCATGCTAA | 1314 | 50.53 | MVPLTNRNMIRLLITLSLVAVAFADIANFDDYWKARAAEAEQAAVEAFDPNPDNVTDSLNAEVGKEWGGSNSTRRGLKKYTGPCRATNPIDRCWRCDPNWANDRKKLATCVLGFGRKTTGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWITFSTNMAIRLNQELIVTSDKTIDARGANVQIAYGAGITLQYVKNVIIHGLRIHNIVMGTGGMIRDAVDHVGLRTMSDGDGISIFGSSNIWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNDVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNGYAKEVTKREYSPENVWKTWTWRSEGDLMMNGAFFTTSGDLRKRRPYSRMDMISYKPGTYVTRMTRFAGALACFIGRPC | 437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2216218 | 2218728 | + | Maker00026009 | Lcy7g0255 | 637087 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g0255 | 437 | Gene3D | - | 87 | 430 | IPR012334 | - | |
Lcy7g0255 | 437 | SUPERFAMILY | Pectin lyase-like | 88 | 428 | IPR011050 | - | |
Lcy7g0255 | 437 | PRINTS | Pollen allergen Amb family signature | 170 | 186 | IPR018082 | - | |
Lcy7g0255 | 437 | PRINTS | Pollen allergen Amb family signature | 408 | 431 | IPR018082 | - | |
Lcy7g0255 | 437 | PRINTS | Pollen allergen Amb family signature | 110 | 127 | IPR018082 | - | |
Lcy7g0255 | 437 | PRINTS | Pollen allergen Amb family signature | 378 | 402 | IPR018082 | - | |
Lcy7g0255 | 437 | PRINTS | Pollen allergen Amb family signature | 336 | 355 | IPR018082 | - | |
Lcy7g0255 | 437 | PRINTS | Pollen allergen Amb family signature | 234 | 255 | IPR018082 | - | |
Lcy7g0255 | 437 | PRINTS | Pollen allergen Amb family signature | 134 | 159 | IPR018082 | - | |
Lcy7g0255 | 437 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - | |
Lcy7g0255 | 437 | Pfam | Pectate lyase | 172 | 353 | IPR002022 | - | |
Lcy7g0255 | 437 | SMART | amb_all | 162 | 359 | IPR002022 | - | |
Lcy7g0255 | 437 | Pfam | Pectate lyase, N terminus | 26 | 77 | IPR007524 | GO:0030570(InterPro) | |
Lcy7g0255 | 437 | PANTHER | PECTATE LYASE 18-RELATED | 24 | 432 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2288 | Lcy-Chr5:45853840 | Lcy7g0255 | Lcy-Chr7:2216218 | 1.70E-207 | dispersed | |
Lcy7g0255 | Lcy-Chr7:2216218 | Lcy7g0622 | Lcy-Chr7:5671541 | 1.07E-127 | dispersed | |
Lcy7g0255 | Lcy-Chr7:2216218 | Lcy13g0445 | Lcy-Chr13:5232370 | 1.20E-147 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy7g0255 | K01728 | - | csv:101206497 | 778.089 |