Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0255 ATGGTACCATTAACGAACAGAAATATGATTCGGCTGCTGATAACATTGTCATTGGTGGCTGTCGCATTTGCTGACATTGCAAACTTCGATGACTACTGGAAAGCACGCGCCGCCGAGGCCGAACAAGCCGCCGTCGAGGCCTTTGATCCCAATCCTGACAACGTCACCGACTCCTTGAACGCCGAAGTTGGCAAGGAATGGGGTGGAAGCAACAGTACGAGGAGGGGTTTGAAGAAATACACAGGGCCATGCAGAGCCACAAATCCCATCGATAGGTGCTGGAGATGCGACCCAAATTGGGCCAACGACCGTAAGAAGCTGGCCACTTGCGTTCTGGGTTTCGGCCGCAAGACCACCGGCGGCAAGTTGGGTCCATACTACGTGGTGAACGACTCGTCGGACTCGGACCTTATGAACCCAAAACCTGGGACCCTGCGTCATGCCGTGATCCAAAAAGGGCCGCTCTGGATAACCTTTTCTACCAACATGGCCATTAGGCTCAATCAAGAGCTCATTGTGACCAGCGACAAGACCATCGATGCTAGAGGGGCCAATGTTCAGATTGCATATGGGGCTGGCATTACTCTTCAGTACGTCAAGAATGTCATCATCCATGGCCTTCGTATTCATAACATCGTCATGGGTACTGGTGGGATGATCAGAGACGCTGTCGACCATGTGGGTTTGAGGACAATGAGCGATGGCGACGGCATTTCCATCTTCGGTTCCTCCAATATTTGGATTGACCATGTTTCCATGTCCAGATGTCATGACGGTCTCATCGATGCCATTATGGGATCCACTGCCATCACCATCTCCAATTGCCACTTTACTCACCACAATGACGTGATGTTGTTCGGAGCGAGTGACGGCTACTCAAATGATCAAATAATGCAAGTGACGGTGGCATTCAACCACTTCGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATGTTGTCAACAATGACTACACTCATTGGCTTATGTATGCCATCGGTGGTAGCCAACATCCCACCATTATCAGCCAGGGCAATCGCTTCATTGCTCCTCCCAATGGATATGCTAAAGAGGTGACGAAGAGAGAATACTCGCCTGAGAATGTGTGGAAGACCTGGACATGGAGATCAGAGGGAGATTTGATGATGAACGGAGCATTCTTTACTACCTCAGGTGATCTAAGAAAGAGAAGACCCTACTCAAGAATGGATATGATCTCATATAAGCCAGGGACGTACGTTACGAGAATGACACGTTTCGCAGGCGCACTCGCCTGCTTCATCGGCCGACCATGCTAA 1314 50.53 MVPLTNRNMIRLLITLSLVAVAFADIANFDDYWKARAAEAEQAAVEAFDPNPDNVTDSLNAEVGKEWGGSNSTRRGLKKYTGPCRATNPIDRCWRCDPNWANDRKKLATCVLGFGRKTTGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWITFSTNMAIRLNQELIVTSDKTIDARGANVQIAYGAGITLQYVKNVIIHGLRIHNIVMGTGGMIRDAVDHVGLRTMSDGDGISIFGSSNIWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNDVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNGYAKEVTKREYSPENVWKTWTWRSEGDLMMNGAFFTTSGDLRKRRPYSRMDMISYKPGTYVTRMTRFAGALACFIGRPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2216218 2218728 + Maker00026009 Lcy7g0255 637087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0255 437 Gene3D - 87 430 IPR012334 -
Lcy7g0255 437 SUPERFAMILY Pectin lyase-like 88 428 IPR011050 -
Lcy7g0255 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Lcy7g0255 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Lcy7g0255 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Lcy7g0255 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Lcy7g0255 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Lcy7g0255 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Lcy7g0255 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Lcy7g0255 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Lcy7g0255 437 Pfam Pectate lyase 172 353 IPR002022 -
Lcy7g0255 437 SMART amb_all 162 359 IPR002022 -
Lcy7g0255 437 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570(InterPro)
Lcy7g0255 437 PANTHER PECTATE LYASE 18-RELATED 24 432 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2288 Lcy-Chr5:45853840 Lcy7g0255 Lcy-Chr7:2216218 1.70E-207 dispersed
Lcy7g0255 Lcy-Chr7:2216218 Lcy7g0622 Lcy-Chr7:5671541 1.07E-127 dispersed
Lcy7g0255 Lcy-Chr7:2216218 Lcy13g0445 Lcy-Chr13:5232370 1.20E-147 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0255 K01728 - csv:101206497 778.089