Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g0265 | ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCACGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGGAAACGATCCATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAATTTTGAATTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCACTTGGGCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGAAGGGCCAGGTGGAAGACTAAGCAGCTAGAAAAAGACTACGATCTTCTCAAGAGACAATTCGAAGCTATCAAATCAGATAATGAAGCCCTCAAATCCCAGAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCTGCCATTGACAGCCCTCATCAGCATCAGCACCATCCAACCAACAGACCTCTTTTTCCCACTTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTCCAAACCTCTTCAAGATCAGACCCACCAAAGCAACTTGAAAACAACAACAACAACAATCATCAAATTGCCAAAGAAGAAAGCAGCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA | 897 | 42.81 | MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSDPPKQLENNNNNNHQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2301568 | 2304285 | - | Maker00025845 | Lcy7g0265 | 637097 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g0265 | 298 | SMART | HOX_1 | 82 | 143 | IPR001356 | GO:0003677(InterPro) | |
Lcy7g0265 | 298 | CDD | homeodomain | 84 | 140 | IPR001356 | GO:0003677(InterPro) | |
Lcy7g0265 | 298 | PRINTS | Lambda-repressor HTH signature | 119 | 135 | IPR000047 | GO:0003677(InterPro) | |
Lcy7g0265 | 298 | PRINTS | Lambda-repressor HTH signature | 110 | 119 | IPR000047 | GO:0003677(InterPro) | |
Lcy7g0265 | 298 | SUPERFAMILY | Homeodomain-like | 73 | 141 | IPR009057 | - | |
Lcy7g0265 | 298 | Coils | Coil | 131 | 179 | - | - | |
Lcy7g0265 | 298 | Pfam | Homeodomain | 84 | 137 | IPR001356 | GO:0003677(InterPro) | |
Lcy7g0265 | 298 | ProSiteProfiles | 'Homeobox' domain profile. | 79 | 139 | IPR001356 | GO:0003677(InterPro) | |
Lcy7g0265 | 298 | Gene3D | - | 76 | 145 | - | - | |
Lcy7g0265 | 298 | Pfam | Homeobox associated leucine zipper | 139 | 179 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy7g0265 | 298 | MobiDBLite | consensus disorder prediction | 187 | 209 | - | - | |
Lcy7g0265 | 298 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 76 | 143 | - | - | |
Lcy7g0265 | 298 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 62 | 279 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Lcy7g0265 | 298 | ProSitePatterns | 'Homeobox' domain signature. | 114 | 137 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lcy7g0265 | 298 | MobiDBLite | consensus disorder prediction | 62 | 84 | - | - | |
Lcy7g0265 | 298 | MobiDBLite | consensus disorder prediction | 180 | 236 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2295 | Lcy-Chr13:41856920 | Lcy7g0265 | Lcy-Chr7:2301568 | 4.93E-29 | dispersed | |
Lcy7g0246 | Lcy-Chr7:2143585 | Lcy7g0265 | Lcy-Chr7:2301568 | 4.00E-21 | dispersed | |
Lcy7g0265 | Lcy-Chr7:2301568 | Lcy9g1711 | Lcy-Chr9:42333532 | 6.92E-24 | dispersed | |
Lcy10g1995 | Lcy-Chr10:44035224 | Lcy7g0265 | Lcy-Chr7:2301568 | 7.09E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20369 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy7g0265 | K09338 | - | csv:101221595 | 522.316 |