Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0265 ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCACGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGGAAACGATCCATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAATTTTGAATTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCACTTGGGCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGAAGGGCCAGGTGGAAGACTAAGCAGCTAGAAAAAGACTACGATCTTCTCAAGAGACAATTCGAAGCTATCAAATCAGATAATGAAGCCCTCAAATCCCAGAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCTGCCATTGACAGCCCTCATCAGCATCAGCACCATCCAACCAACAGACCTCTTTTTCCCACTTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTCCAAACCTCTTCAAGATCAGACCCACCAAAGCAACTTGAAAACAACAACAACAACAATCATCAAATTGCCAAAGAAGAAAGCAGCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 897 42.81 MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSDPPKQLENNNNNNHQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2301568 2304285 - Maker00025845 Lcy7g0265 637097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0265 298 SMART HOX_1 82 143 IPR001356 GO:0003677(InterPro)
Lcy7g0265 298 CDD homeodomain 84 140 IPR001356 GO:0003677(InterPro)
Lcy7g0265 298 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677(InterPro)
Lcy7g0265 298 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677(InterPro)
Lcy7g0265 298 SUPERFAMILY Homeodomain-like 73 141 IPR009057 -
Lcy7g0265 298 Coils Coil 131 179 - -
Lcy7g0265 298 Pfam Homeodomain 84 137 IPR001356 GO:0003677(InterPro)
Lcy7g0265 298 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677(InterPro)
Lcy7g0265 298 Gene3D - 76 145 - -
Lcy7g0265 298 Pfam Homeobox associated leucine zipper 139 179 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0265 298 MobiDBLite consensus disorder prediction 187 209 - -
Lcy7g0265 298 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
Lcy7g0265 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 62 279 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lcy7g0265 298 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy7g0265 298 MobiDBLite consensus disorder prediction 62 84 - -
Lcy7g0265 298 MobiDBLite consensus disorder prediction 180 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2295 Lcy-Chr13:41856920 Lcy7g0265 Lcy-Chr7:2301568 4.93E-29 dispersed
Lcy7g0246 Lcy-Chr7:2143585 Lcy7g0265 Lcy-Chr7:2301568 4.00E-21 dispersed
Lcy7g0265 Lcy-Chr7:2301568 Lcy9g1711 Lcy-Chr9:42333532 6.92E-24 dispersed
Lcy10g1995 Lcy-Chr10:44035224 Lcy7g0265 Lcy-Chr7:2301568 7.09E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20369 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0265 K09338 - csv:101221595 522.316