Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0293 ATGGGAAGAGTAAAGCTCAAGATTAAGAGATTGGAGAACACAAACGGACGCCAAGCAACATATGCCAAAAGAAAGAACGGTATCATGAAGAAGGCTAATGAGTTATCCATCTTGTGTGACATCGATATTATTCTTCTCATGTTTTCACCAACCGGAAAGCCCTCCCTTTGTTGCGGAAAACGAAGCATTGAAGAGGTAATTGCAAAGTTTGCTCAACAAACTCCTCAGGAAAGGGCAAAAAGGAAATTGGAAAGCCTTGAAGCACTGCGAAAAACTTTTAAGAAACTCGACCACGATGTCAACATACAAGATTTCCTTGGAACAAGAAGCCAAATGATTGAGGATTTGGCTGGCCAAGCAAAGTTATTACGGACCCAACTTTCTGATGTTCATCAGAGATTAAGCTTTTGGGGTAATCCTGATAAGATAAACAACGTGGATCATTTGACCCAAATGGAGAATTCGTTGAGAGAATCACTTGATCAAGTTCGAGCCCACAAGGAAAATATGCAGAAGAAGCCTCCAGTACCATTAGAGTTCACTAATCAGATGCAGGATGGAATGCATCTACCTTTCGATATGAGTGTTGAGCAACAGCTTCAACAACTCCAACACTTCTCTTGGATTCCCAGTGATGGTCAAAATATAGTTTTACACGACGATCCAAACTTCGTTCCCCATAGAGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTACCCTGGTTATTTCGGCACGGGGAGAAGTCCGGAGATTTCTAATTCTGGACAAGAAAATGGCATCCTCCCTGAACTCAGCAGAACAGAACCTCTAAGGCCCCAGCTAGGAGGGCAAAATTCCTACATGTCTTATAATGTCAACTTTTTTAATGACCCGAGATTTCAACCAGCAGCAGAGATGAACCTGCCAGTAAATCCTGTAGATTATCATGTTAATGGGAACTACGACAACACCCAACACAATTGGGCTTCTTCTTCTGGCCCTTGTGCTGTTTCATTGTTAGACGATCGCTTATTTCCATAA 1026 42.3 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKANELSILCDIDIILLMFSPTGKPSLCCGKRSIEEVIAKFAQQTPQERAKRKLESLEALRKTFKKLDHDVNIQDFLGTRSQMIEDLAGQAKLLRTQLSDVHQRLSFWGNPDKINNVDHLTQMENSLRESLDQVRAHKENMQKKPPVPLEFTNQMQDGMHLPFDMSVEQQLQQLQHFSWIPSDGQNIVLHDDPNFVPHRDVECSASSSFASYPGYFGTGRSPEISNSGQENGILPELSRTEPLRPQLGGQNSYMSYNVNFFNDPRFQPAAEMNLPVNPVDYHVNGNYDNTQHNWASSSGPCAVSLLDDRLFP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2526470 2530282 + Maker00025814 Lcy7g0293 637125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0293 341 Coils Coil 76 96 - -
Lcy7g0293 341 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Lcy7g0293 341 Coils Coil 149 173 - -
Lcy7g0293 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 204 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy7g0293 341 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy7g0293 341 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy7g0293 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy7g0293 341 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy7g0293 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy7g0293 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy7g0293 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy7g0293 341 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Lcy7g0293 341 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0293 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0293 Lcy-Chr7:2526470 Lcy9g2058 Lcy-Chr9:45376818 5.91E-15 dispersed
Lcy6g0987 Lcy-Chr6:10413537 Lcy7g0293 Lcy-Chr7:2526470 1.29E-24 transposed
Lcy5g2538 Lcy-Chr5:48150829 Lcy7g0293 Lcy-Chr7:2526470 1.14E-107 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20375 None None None None Lcy TF