Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g0293 | ATGGGAAGAGTAAAGCTCAAGATTAAGAGATTGGAGAACACAAACGGACGCCAAGCAACATATGCCAAAAGAAAGAACGGTATCATGAAGAAGGCTAATGAGTTATCCATCTTGTGTGACATCGATATTATTCTTCTCATGTTTTCACCAACCGGAAAGCCCTCCCTTTGTTGCGGAAAACGAAGCATTGAAGAGGTAATTGCAAAGTTTGCTCAACAAACTCCTCAGGAAAGGGCAAAAAGGAAATTGGAAAGCCTTGAAGCACTGCGAAAAACTTTTAAGAAACTCGACCACGATGTCAACATACAAGATTTCCTTGGAACAAGAAGCCAAATGATTGAGGATTTGGCTGGCCAAGCAAAGTTATTACGGACCCAACTTTCTGATGTTCATCAGAGATTAAGCTTTTGGGGTAATCCTGATAAGATAAACAACGTGGATCATTTGACCCAAATGGAGAATTCGTTGAGAGAATCACTTGATCAAGTTCGAGCCCACAAGGAAAATATGCAGAAGAAGCCTCCAGTACCATTAGAGTTCACTAATCAGATGCAGGATGGAATGCATCTACCTTTCGATATGAGTGTTGAGCAACAGCTTCAACAACTCCAACACTTCTCTTGGATTCCCAGTGATGGTCAAAATATAGTTTTACACGACGATCCAAACTTCGTTCCCCATAGAGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTACCCTGGTTATTTCGGCACGGGGAGAAGTCCGGAGATTTCTAATTCTGGACAAGAAAATGGCATCCTCCCTGAACTCAGCAGAACAGAACCTCTAAGGCCCCAGCTAGGAGGGCAAAATTCCTACATGTCTTATAATGTCAACTTTTTTAATGACCCGAGATTTCAACCAGCAGCAGAGATGAACCTGCCAGTAAATCCTGTAGATTATCATGTTAATGGGAACTACGACAACACCCAACACAATTGGGCTTCTTCTTCTGGCCCTTGTGCTGTTTCATTGTTAGACGATCGCTTATTTCCATAA | 1026 | 42.3 | MGRVKLKIKRLENTNGRQATYAKRKNGIMKKANELSILCDIDIILLMFSPTGKPSLCCGKRSIEEVIAKFAQQTPQERAKRKLESLEALRKTFKKLDHDVNIQDFLGTRSQMIEDLAGQAKLLRTQLSDVHQRLSFWGNPDKINNVDHLTQMENSLRESLDQVRAHKENMQKKPPVPLEFTNQMQDGMHLPFDMSVEQQLQQLQHFSWIPSDGQNIVLHDDPNFVPHRDVECSASSSFASYPGYFGTGRSPEISNSGQENGILPELSRTEPLRPQLGGQNSYMSYNVNFFNDPRFQPAAEMNLPVNPVDYHVNGNYDNTQHNWASSSGPCAVSLLDDRLFP | 341 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2526470 | 2530282 | + | Maker00025814 | Lcy7g0293 | 637125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g0293 | 341 | Coils | Coil | 76 | 96 | - | - | |
| Lcy7g0293 | 341 | CDD | MADS_SRF_like | 2 | 81 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
| Lcy7g0293 | 341 | Coils | Coil | 149 | 173 | - | - | |
| Lcy7g0293 | 341 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 204 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lcy7g0293 | 341 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy7g0293 | 341 | SUPERFAMILY | SRF-like | 2 | 94 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy7g0293 | 341 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 54 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy7g0293 | 341 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy7g0293 | 341 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy7g0293 | 341 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy7g0293 | 341 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy7g0293 | 341 | FunFam | Agamous-like MADS-box protein AGL30 | 14 | 95 | - | - | |
| Lcy7g0293 | 341 | Gene3D | - | 14 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy7g0293 | Lcy-Chr7:2526470 | Lcy9g2058 | Lcy-Chr9:45376818 | 5.91E-15 | dispersed | |
| Lcy6g0987 | Lcy-Chr6:10413537 | Lcy7g0293 | Lcy-Chr7:2526470 | 1.29E-24 | transposed | |
| Lcy5g2538 | Lcy-Chr5:48150829 | Lcy7g0293 | Lcy-Chr7:2526470 | 1.14E-107 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20375 | None | None | None | None | Lcy | TF |
Pathway information