Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0294 ATGAAAAAGGAGATAGGGGCAAAGGCCAAAGAGAAGGGGATGCTGCTTGGAATGGCTTCTGTCTTTGTCTTTTTGGCAGGCTTCTATGCCTTGGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGGTGGACTGGCGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGTAACTTGTACAGTCAAGGCTATGGAACAAACACTGCTGCTCTGAGTACGGCTTTGTTCAACAACGGGTTGAGCTGTGGCTCTTGCTATGAGATTAAGTGCGCTAGTGACCCTAAATGGTGCCTGCCAGGCTCCATTGTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCCCTCCCCAACAACGCAGGAGGTTGGTGCAACCCTCCATTGCAGCACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTTGCCTACAGAAGGGTGCCCTGCAGGAGAAGGGGAGGCATAAGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTTCATGCAGTTTCCATTAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGCAACAGCTACCTCAATGGCCAAAGCCTTTCCTTCAAGGTCACCACCAGTGACGGCCGTACAGTCATCTCCAACAACGTTGTCCCAGCCGGCTGGTCCTTTGGACAGACTTACAGTGGTGCTCAATTCTGA 798 51.75 MKKEIGAKAKEKGMLLGMASVFVFLAGFYALVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNVVPAGWSFGQTYSGAQF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2530779 2532764 - Maker00026031 Lcy7g0294 637126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0294 265 Gene3D - 173 265 IPR036749 -
Lcy7g0294 265 SMART dpbb_1 78 163 IPR007112 -
Lcy7g0294 265 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576(InterPro)
Lcy7g0294 265 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576(InterPro)
Lcy7g0294 265 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576(InterPro)
Lcy7g0294 265 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576(InterPro)
Lcy7g0294 265 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Lcy7g0294 265 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576(InterPro)
Lcy7g0294 265 FunFam Expansin 32 169 - -
Lcy7g0294 265 SUPERFAMILY Barwin-like endoglucanases 42 191 IPR036908 -
Lcy7g0294 265 CDD DPBB_EXPA_N 42 168 - -
Lcy7g0294 265 Pfam Lytic transglycolase 78 163 IPR009009 -
Lcy7g0294 265 SUPERFAMILY PHL pollen allergen 170 261 IPR036749 -
Lcy7g0294 265 Gene3D - 30 169 IPR036908 -
Lcy7g0294 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 173 IPR007112 -
Lcy7g0294 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 262 IPR007117 -
Lcy7g0294 265 FunFam Expansin 173 265 - -
Lcy7g0294 265 PANTHER EXPANSIN-A15 24 265 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 PRINTS Expansin signature 100 111 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 PRINTS Expansin signature 172 184 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 PRINTS Expansin signature 131 148 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 PRINTS Expansin signature 112 122 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 PRINTS Expansin signature 73 87 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 PRINTS Expansin signature 148 161 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 PRINTS Expansin signature 248 264 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 PRINTS Expansin signature 184 205 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 PRINTS Expansin signature 219 240 IPR002963 GO:0009664(InterPro)
Lcy7g0294 265 Pfam Expansin C-terminal domain 174 251 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2154 Lcy-Chr10:45546815 Lcy7g0294 Lcy-Chr7:2530779 8.05E-145 dispersed
Lcy4g1224 Lcy-Chr4:27626994 Lcy7g0294 Lcy-Chr7:2530779 1.29E-150 dispersed
Lcy7g0294 Lcy-Chr7:2530779 Lcy7g1071 Lcy-Chr7:11465885 1.99E-142 dispersed
Lcy13g1894 Lcy-Chr13:37887633 Lcy7g0294 Lcy-Chr7:2530779 3.40E-121 transposed
Lcy10g2014 Lcy-Chr10:44274019 Lcy7g0294 Lcy-Chr7:2530779 1.62E-145 wgd
Lcy2g0567 Lcy-Chr2:4877217 Lcy7g0294 Lcy-Chr7:2530779 3.96E-153 wgd
Lcy5g2536 Lcy-Chr5:48146177 Lcy7g0294 Lcy-Chr7:2530779 1.11E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0294 - - - 0.0