Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0308 ATGAGCTCCGAACCGTCTGGAACTGCCGCCGGTTCGCCGGCGCCGGGGAGCGCAGGAGGTAGGGGAAACTCGTCGTCGTCATCGGCATCGGGGACGAACAGGGAGAAGCAGAAGGAGAAAGCGAGGGTGAGTAGAACGTCGCTGATATTGTGGCACGCTCATCAGAACGATTCTACTGCTGTTCGCAAGCTTCTGGAGGAGGATCAGTCCCTCGTCCATGCCAGAGATTACGACAGCCGCACACCTCTCCATGTTGCATCGCTTCATGGCTGGATCGAAGTTGCCAAGTGTTTGATTGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACTCCGCTTGCTGATGCGGAAGGAGCTAAAAAGCATGGCATGATCGAGTTGTTGAAATCGTATGGCGGCCTGTCCTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCTCCCCCTCTGCCGAATAAATGCGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGGGGTCCTTCGGTGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCATCACTTTCAGATGATAGACTTGTGATCCAGGACTTCCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATAGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCGCTAATGTTAATCACTGAATACTTAAGAGGGGGTGATCTTCACCAGTACCTCAAGGATAAAGGTTCGCTCAGTCCTGCAACGGCCATCAATTTTGCACTGGACATCGCCAGGGGAATGGCTTATCTCCACAATGAGCCAAATGTTATAATTCATCGTGACCTAAAACCAAGGAACGTTCTTTTAGTCAACTCCGGAGCGGACCATCTAAAAGTTGGTGATTTCGGTCTAAGCAAGCTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACTGGCGAGACTGGGAGCTACCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGACGTGTTTTCTTTTGCAATGATATTATACGAGATGCTTGAGGGAGATCCTCCACTGGCAAATTATGAGCCTTATGAAGCTGCCAAATACGTAGCTGAAGGTCATAGACCAATGTTCCGTTCGAAAGGATACCTTCCTGTTCTAAGAGAGTTAACAGAAGAATGTTGGGCATCTGATATGAACAAGAGACCTTCTTTCTTGGAAATTCTCAAAAGACTTGAAAGGATCAAGGAAAACCTACCAACTGAAAATCACTGGAATTTGTTTAATGCATAA 1341 46.61 MSSEPSGTAAGSPAPGSAGGRGNSSSSSASGTNREKQKEKARVSRTSLILWHAHQNDSTAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIEVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRSKGYLPVLRELTEECWASDMNKRPSFLEILKRLERIKENLPTENHWNLFNA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2631918 2638340 - Maker00026008 Lcy7g0308 637140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0308 446 Gene3D - 20 144 IPR036770 -
Lcy7g0308 446 PIRSF ILK 5 446 - -
Lcy7g0308 446 ProSiteProfiles Protein kinase domain profile. 170 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0308 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g0308 446 FunFam serine/threonine-protein kinase STY8 23 144 - -
Lcy7g0308 446 SUPERFAMILY Ankyrin repeat 49 136 IPR036770 -
Lcy7g0308 446 CDD STKc_MAP3K-like 176 428 - -
Lcy7g0308 446 MobiDBLite consensus disorder prediction 18 32 - -
Lcy7g0308 446 FunFam serine/threonine-protein kinase STY46-like 163 249 - -
Lcy7g0308 446 SUPERFAMILY Protein kinase-like (PK-like) 168 440 IPR011009 -
Lcy7g0308 446 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Lcy7g0308 446 Pfam Protein tyrosine and serine/threonine kinase 174 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g0308 446 MobiDBLite consensus disorder prediction 1 43 - -
Lcy7g0308 446 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515(InterPro)
Lcy7g0308 446 ProSitePatterns Protein kinases ATP-binding region signature. 176 197 IPR017441 GO:0005524(InterPro)
Lcy7g0308 446 SMART ANK_2a 78 107 IPR002110 GO:0005515(InterPro)
Lcy7g0308 446 Pfam Ankyrin repeats (3 copies) 52 133 IPR002110 GO:0005515(InterPro)
Lcy7g0308 446 PANTHER SERINE-THREONINE PROTEIN KINASE 22 432 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy7g0308 446 Gene3D Phosphorylase Kinase; domain 1 155 249 - -
Lcy7g0308 446 FunFam Integrin-linked protein kinase family 249 444 - -
Lcy7g0308 446 Gene3D Transferase(Phosphotransferase) domain 1 250 443 - -
Lcy7g0308 446 SMART serkin_6 170 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0308 Lcy-Chr7:2631918 Lcy8g1615 Lcy-Chr8:42719413 2.96E-59 dispersed
Lcy8g1720 Lcy-Chr8:43716715 Lcy7g0308 Lcy-Chr7:2631918 4.20E-19 dispersed
Lcy7g0308 Lcy-Chr7:2631918 Lcy1g0240 Lcy-Chr1:2179730 6.75E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66066 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0308 - - - 0.0