Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0314 ATGGGTGATGATGAAGAACAGCTGCCACCGTCGTCAGCGCCGCCTCCGCCGTCGAAATCTAAGGCACTTCCGTTGAGGCCAACTATTAATCTGCCGCCAAGGACCTCTATGGAGTCGCTCTTCAGCGGTGGGCCGGGTTTGGGAAGCGGGTTTAGCCCAGGACCCATGACCCTCGTCTCGAGCTTCTTCTCCGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCGTCGCCGGTGGCTGTTCCTCCGAGGGCGTCTGAGCTCAAGGGCCCTGCCGGTCTGCTCGATTCTCCGGGGCTTTTTTCTCCCAGTCAGGGACCTTTTGGAATGACACATCAGCAGGCTTTGGCTCAGGTTACTATGCAGGCTGCACAAACCTATTCTCATAAGCAAATACAAGGAGAATCTTTTTCTTCATTGGTACCACCCTCTGCATCCTCCTCAGAGCTTTTGACAACCTTTCCCGGCGAGAAGACTAAAGATCAGCCGGTGCCACCTTCATTGCTGAACTCTGCGGTTGCATCCAAGGAATCATCGGATATCTCTCAATCAGATCAGAGATTGCAATCTTCTTCGTGTAATGTTGATAGGCCTGCTGATGACGGCTACAACTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGTTACTACAAGTGCACGCATCCGAATTGTCCTGTCAAGAAAAAGGTCGAACGATCTCTGGAAGGTCAAGTCATTGAAATTATCTATAAGGGTGAGCACAACCACAAACGACCTCAACCAAACAAGCGGGCAAAGGATGTTGGAAATTCTAATGGATGTTCAAGTATTCATGGAAATCCTAAGCTGTCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGATCAGCAGACGGCTGTGTCTTCCATTGCAAAGAAGGATCAAGAATCGAGTCATGTTACACACGAACAGTTGTCCAGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAGTCGAAAAGATGAAGATGAACCTGACGCCAAGAGACGGAATACTGAGGTTAGAGTTTCTGAGCCAGCATCTTCTCATAGGACACTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTGGATGATGGCTACAGGTGGCGAAAGTATGGGCAGAAAGTTGTTAAAGGCAACCCTTACCCCAGGAGCTATTATAAATGCACAACTCCGGGATGCAATGTTCGTAAACATGTTGAGAGAGCTTCGACAGACCAAAAAGCTGTCATAACAACGTATGAGGGCAAACACAATCATGATGTTCCAGCTGGTAAAATCAGCAGCCACAGTACAGTCAACAGTAACGTTCCTCAGCTAAAATCACAAAATATAGCTACTGATAACAACACTGATCCTGGGAACTCTCGTCAACAGCCTGTTGGACTTCTACGGTTAAAGAAAGAACAAATAACGTAG 1485 47.34 MGDDEEQLPPSSAPPPPSKSKALPLRPTINLPPRTSMESLFSGGPGLGSGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAVPPRASELKGPAGLLDSPGLFSPSQGPFGMTHQQALAQVTMQAAQTYSHKQIQGESFSSLVPPSASSSELLTTFPGEKTKDQPVPPSLLNSAVASKESSDISQSDQRLQSSSCNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVIEIIYKGEHNHKRPQPNKRAKDVGNSNGCSSIHGNPKLSSQVQSGYLNKLNDQQTAVSSIAKKDQESSHVTHEQLSSTSDGEGGSEIETGVSRKDEDEPDAKRRNTEVRVSEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDQKAVITTYEGKHNHDVPAGKISSHSTVNSNVPQLKSQNIATDNNTDPGNSRQQPVGLLRLKKEQIT 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2684309 2687844 - Maker00026173 Lcy7g0314 637146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0314 494 MobiDBLite consensus disorder prediction 269 313 - -
Lcy7g0314 494 SUPERFAMILY WRKY DNA-binding domain 377 445 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 Gene3D WRKY domain 188 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 Gene3D WRKY domain 370 446 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 MobiDBLite consensus disorder prediction 320 334 - -
Lcy7g0314 494 MobiDBLite consensus disorder prediction 464 480 - -
Lcy7g0314 494 MobiDBLite consensus disorder prediction 140 215 - -
Lcy7g0314 494 ProSiteProfiles WRKY domain profile. 380 445 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 MobiDBLite consensus disorder prediction 255 371 - -
Lcy7g0314 494 SMART WRKY_cls 204 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 SMART WRKY_cls 385 444 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 MobiDBLite consensus disorder prediction 169 202 - -
Lcy7g0314 494 Pfam WRKY DNA -binding domain 386 443 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 Pfam WRKY DNA -binding domain 205 261 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 MobiDBLite consensus disorder prediction 140 160 - -
Lcy7g0314 494 SUPERFAMILY WRKY DNA-binding domain 203 263 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 MobiDBLite consensus disorder prediction 1 52 - -
Lcy7g0314 494 MobiDBLite consensus disorder prediction 336 360 - -
Lcy7g0314 494 ProSiteProfiles WRKY domain profile. 205 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0314 494 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 136 465 IPR044810 GO:0003700(InterPro)
Lcy7g0314 494 FunFam WRKY transcription factor 33 372 438 - -
Lcy7g0314 494 FunFam WRKY transcription factor 191 264 - -
Lcy7g0314 494 MobiDBLite consensus disorder prediction 464 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0178 Lcy-Chr2:1427287 Lcy7g0314 Lcy-Chr7:2684309 3.34E-39 dispersed
Lcy6g0540 Lcy-Chr6:5106307 Lcy7g0314 Lcy-Chr7:2684309 2.13E-21 dispersed
Lcy6g1902 Lcy-Chr6:39836153 Lcy7g0314 Lcy-Chr7:2684309 2.50E-80 dispersed
Lcy7g0314 Lcy-Chr7:2684309 Lcy8g1705 Lcy-Chr8:43605441 1.74E-71 dispersed
Lcy5g0252 Lcy-Chr5:2378355 Lcy7g0314 Lcy-Chr7:2684309 2.82E-64 transposed
Lcy10g2040 Lcy-Chr10:44502823 Lcy7g0314 Lcy-Chr7:2684309 3.22E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20377 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0314 - - - 0.0