Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0315 ATGTCGGACGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATTGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACTGGGAAGCATGGACATGCTAAATGTCACTTTGTTGGCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTTCCCCATGTCAGCCGCACTGATTACCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGAAGCACCAAGGATGACCTGAGACTTCCAACTGATGAGAGTTTGCTGTCCCAGACCGCATTGCTTGTTCCAACGAAAGGATTTCTTCCTCCACTCAGTAAAGTACATTAG 435 48.05 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGSTKDDLRLPTDESLLSQTALLVPTKGFLPPLSKVH 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2691353 2692683 - Maker00026154 Lcy7g0315 637147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0315 144 Gene3D - 86 131 IPR012340 -
Lcy7g0315 144 MobiDBLite consensus disorder prediction 1 21 - -
Lcy7g0315 144 Gene3D - 1 85 IPR014722 -
Lcy7g0315 144 SUPERFAMILY Nucleic acid-binding proteins 86 126 IPR012340 -
Lcy7g0315 144 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Lcy7g0315 144 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lcy7g0315 144 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Lcy7g0315 144 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 123 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lcy7g0315 144 NCBIfam translation initiation factor IF-5A 17 121 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lcy7g0315 144 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 126 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lcy7g0315 144 PIRSF Transl_init_eIF5A 1 134 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lcy7g0315 144 SMART eIF_5a_2 85 134 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lcy7g0315 144 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0177 Lcy-Chr2:1423151 Lcy7g0315 Lcy-Chr7:2691353 1.27E-80 dispersed
Lcy7g0315 Lcy-Chr7:2691353 Lcy9g1891 Lcy-Chr9:43982955 1.11E-79 dispersed
Lcy7g0315 Lcy-Chr7:2691353 Lcy13g1832 Lcy-Chr13:37302986 1.59E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0315 K03263 - csv:101214693 252.292