Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g0341 | ATGAGCTCCAACAATGAGCTTCCTCAATCTAACTCCGCCGCCGCCGAGCAACCAAAGAAAATCAAACGCATCAGAAACAATTCCAATTCCAATAAGAGTAGTAGTGAGTCGAACAACAACAACAACAACAATCACCCAGTGTACCGAGGCGTCCGCATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCACCCCGGAAATGGCCGCCCGTGCCCACGACGTCGCCGCCTTCAGCATCAAAGGCTCCTCCGCCACCCTCAATTTCCCCGACCTCCTCCACCTCCTCCCCCGCCCCGTCTCCCTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGCACAACCTCGACCTCGACGACCACCACTCCCACGTCGACGACGACCTCACCGAGATCATCCAACTCCCCACCCTCGGCTTCCGATTGCCTTCTTCTCATTTGTTCCTCGTCAATCGTGGAGGATTTGTCTGTATTGGTGTAATGTCGCTGGATGGAGATGACCGGAAAAGTAGAGAAGAAAATAGAAAGGGCATTTTAATTTAA | 597 | 55.11 | MSSNNELPQSNSAAAEQPKKIKRIRNNSNSNKSSSESNNNNNNNHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAFSIKGSSATLNFPDLLHLLPRPVSLAPRDVQAAAAKAAHMHNLDLDDHHSHVDDDLTEIIQLPTLGFRLPSSHLFLVNRGGFVCIGVMSLDGDDRKSREENRKGILI | 198 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2864928 | 2865776 | + | Maker00026057 | Lcy7g0341 | 637173 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g0341 | 198 | MobiDBLite | consensus disorder prediction | 27 | 48 | - | - | |
Lcy7g0341 | 198 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 30 | 138 | IPR051032 | - | |
Lcy7g0341 | 198 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Lcy7g0341 | 198 | PRINTS | Ethylene responsive element binding protein signature | 70 | 86 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy7g0341 | 198 | PRINTS | Ethylene responsive element binding protein signature | 48 | 59 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy7g0341 | 198 | ProSiteProfiles | AP2/ERF domain profile. | 47 | 104 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy7g0341 | 198 | SUPERFAMILY | DNA-binding domain | 47 | 105 | IPR016177 | GO:0003677(InterPro) | |
Lcy7g0341 | 198 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Lcy7g0341 | 198 | CDD | AP2 | 48 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy7g0341 | 198 | FunFam | Ethylene-responsive transcription factor 2 | 46 | 105 | - | - | |
Lcy7g0341 | 198 | Pfam | AP2 domain | 46 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy7g0341 | 198 | SMART | rav1_2 | 47 | 110 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy7g0341 | 198 | Gene3D | AP2/ERF domain | 47 | 105 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g1164 | Lcy-Chr6:13456833 | Lcy7g0341 | Lcy-Chr7:2864928 | 5.04E-101 | dispersed | |
Lcy7g0341 | Lcy-Chr7:2864928 | Lcy9g1154 | Lcy-Chr9:35551447 | 3.41E-126 | dispersed | |
Lcy7g0341 | Lcy-Chr7:2864928 | Lcy5g0043 | Lcy-Chr5:584555 | 4.82E-123 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20379 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy7g0341 | K09286 | - | csv:101206242 | 188.348 |