Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0341 ATGAGCTCCAACAATGAGCTTCCTCAATCTAACTCCGCCGCCGCCGAGCAACCAAAGAAAATCAAACGCATCAGAAACAATTCCAATTCCAATAAGAGTAGTAGTGAGTCGAACAACAACAACAACAACAATCACCCAGTGTACCGAGGCGTCCGCATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCACCCCGGAAATGGCCGCCCGTGCCCACGACGTCGCCGCCTTCAGCATCAAAGGCTCCTCCGCCACCCTCAATTTCCCCGACCTCCTCCACCTCCTCCCCCGCCCCGTCTCCCTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGCACAACCTCGACCTCGACGACCACCACTCCCACGTCGACGACGACCTCACCGAGATCATCCAACTCCCCACCCTCGGCTTCCGATTGCCTTCTTCTCATTTGTTCCTCGTCAATCGTGGAGGATTTGTCTGTATTGGTGTAATGTCGCTGGATGGAGATGACCGGAAAAGTAGAGAAGAAAATAGAAAGGGCATTTTAATTTAA 597 55.11 MSSNNELPQSNSAAAEQPKKIKRIRNNSNSNKSSSESNNNNNNNHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAFSIKGSSATLNFPDLLHLLPRPVSLAPRDVQAAAAKAAHMHNLDLDDHHSHVDDDLTEIIQLPTLGFRLPSSHLFLVNRGGFVCIGVMSLDGDDRKSREENRKGILI 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2864928 2865776 + Maker00026057 Lcy7g0341 637173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0341 198 MobiDBLite consensus disorder prediction 27 48 - -
Lcy7g0341 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 138 IPR051032 -
Lcy7g0341 198 MobiDBLite consensus disorder prediction 1 49 - -
Lcy7g0341 198 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0341 198 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0341 198 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0341 198 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677(InterPro)
Lcy7g0341 198 MobiDBLite consensus disorder prediction 1 16 - -
Lcy7g0341 198 CDD AP2 48 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0341 198 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Lcy7g0341 198 Pfam AP2 domain 46 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0341 198 SMART rav1_2 47 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0341 198 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1164 Lcy-Chr6:13456833 Lcy7g0341 Lcy-Chr7:2864928 5.04E-101 dispersed
Lcy7g0341 Lcy-Chr7:2864928 Lcy9g1154 Lcy-Chr9:35551447 3.41E-126 dispersed
Lcy7g0341 Lcy-Chr7:2864928 Lcy5g0043 Lcy-Chr5:584555 4.82E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20379 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0341 K09286 - csv:101206242 188.348