Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0345 ATGGATCCCCCCACCATCTACCGCTCTCGCAGAACCACCAACAAATCTGACCTCTACTCCACAGTTGTCATCCATTCCAATTCCGATTCCGACTCCGACAACAATCCCACCGATCGGAACCTTCAGCGCCGACGAAGGCACCCGAGCGAAGGACAAGACCCATACGCCACAATGGTCTACAAGGACGTCGACAAGGGCCGCGAGGATGACGATGACGATGATTCCTCTCTCCCTCCTCTCCTTAAACGTCTTCCCAAGGATTTCGGTGGCGGAGCCCCAATTGACTACGAGGACGACGATGATTTTGGATTTGATCACGAGACTGAAGATTTTGGTACTATGATCGTCAAGACGGAAAGGAATCGTCCTCGCAATCGCTCTGGGTCTTCATCAGCTTCGACGAAGCCTCGAAGTTCGCCGTTGCCATTCGTGAATTTTCAGACCGGGAGCCCTGGAACGAGAGGAGGCGGTAGAGGTGGTAGTGAAGAAGGCGACGAGAGCGAGGAAGATGATGGTGATGGGTTTTCGACGTTTGTGGTGAGGTCCACGGCGAAGTCGCGGAGCAGAGAATCTGTTAGTGGGACTATTCTTCGAAGGACGGGCGGTAGTCGTAGTGATACTAGAGATGGAGGCGGAGGACTTGAGGGGTCCACGTTGGGCAGAGCGGTGGCGAGCATGCAAGGAATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAGGGGGAATGGATCCCCGAGGAGTGAGGAAGGCGGTGGTCGGATGTGCAGTAAGGTATCTTCGAGTTCGATTCCTGAAAGCATCACCAGGGAAGATCCAAATTCTAAGTATGAATTGCTCAACGAACTCGGAAAGGGGTCCTATGGGGCTGTTTATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATAAAGGTTATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATAGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTACCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACTGAGGAAGCTTTAGAGGAATATCAGATAGCATATATCTGTAGGGAGGCATTGAAGGGCCTCGCTTATCTTCACTCAATATTCAAAGTTCACAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCCCAGCTAACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACCCCACATTGGATGGCTCCCGAAGTTATTCAGGAAAGTCGGTACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCTATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCCTGGTGTTCCACGATTTTGTTGCGAAGTGTCTGACAAAAGATCCTCGTTCACGTCCTGCTGCTTCTGAGATGTTGAAGGCAATGCAAATGGAGGTGCTTGCTGTCTGCTTAGGCTGTTCTGTTCTGAGATGGGATGGGGATTTGAACCTATGCCTCTTAGAGGAGGTAGAGGAATCTATTGGCTTCAGAACTTGGCCAATGATTAGGAACCTTTTGGTGTTCTCTAGTCTTAGCGAGGTGGCTGAACAAAGATATGGAGGAAAACACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAGGCTAGGAAAATTAGGACTTTGATGGCTCAGCAAGCACATAGTGTTCCTCCAGATGCATCAGGAGATGGTACTATAGTAGCTGCAAAGTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATATTGGACTTCAGGTAGCAAATGAAATGCCTGCTGGTGGCACTTGGAGGAAGCTAGAGCAATCAGGTACGGAACTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGTCTCAAATGGATATTGGCAATGCTGAAACACCAACTGGTCCTTTAAGCAATGAAAGCCCATCCATTAGTGTAACTGGAGTCAAAATTGACTCTAGTGTGGTGGATGGTACGGGAGGTATTGTAAATAATATTCTTGATGGAAAATCGGATCCCACCATGAATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCTTGGCACCTTGAAGAATGAAACTGTCAGCCGGAAATCTTTTGCTCTGCAGGATAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCGTTCTTGAGGGCTACTGATATATCCCCTGTTGCTTTGTTATCTGACAATGTCCTCGGAGGCATGCAGCAAGATAATAGGGGTGCTGTTGCAGTGGAAGCGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGCAGGGGACAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCGACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGACATGCCACTTCAGGAGTTGCAAGCGACTCAAGAACAACAAACCATTCAAAACCTTTGTGATACACTCAGAACTATCCTCCGTTTGTAG 2727 47.23 MDPPTIYRSRRTTNKSDLYSTVVIHSNSDSDSDNNPTDRNLQRRRRHPSEGQDPYATMVYKDVDKGREDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDDDFGFDHETEDFGTMIVKTERNRPRNRSGSSSASTKPRSSPLPFVNFQTGSPGTRGGGRGGSEEGDESEEDDGDGFSTFVVRSTAKSRSRESVSGTILRRTGGSRSDTRDGGGGLEGSTLGRAVASMQGMGELGFGKQRRGNGSPRSEEGGGRMCSKVSSSSIPESITREDPNSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLAYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFVAKCLTKDPRSRPAASEMLKAMQMEVLAVCLGCSVLRWDGDLNLCLLEEVEESIGFRTWPMIRNLLVFSSLSEVAEQRYGGKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSVPPDASGDGTIVAAKLNQDYGDTVPSKPQNIGLQVANEMPAGGTWRKLEQSGTELVAEGTFGTVIVHDGDENDKVSQMDIGNAETPTGPLSNESPSISVTGVKIDSSVVDGTGGIVNNILDGKSDPTMNASSPSFLGIHELGTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPVALLSDNVLGGMQQDNRGAVAVEALQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2886853 2898197 + Maker00026102 Lcy7g0345 637177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0345 908 SMART serkin_6 275 532 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0345 908 MobiDBLite consensus disorder prediction 125 154 - -
Lcy7g0345 908 MobiDBLite consensus disorder prediction 179 201 - -
Lcy7g0345 908 FunFam serine/threonine-protein kinase dst1 isoform X1 272 535 - -
Lcy7g0345 908 Pfam Protein kinase domain 275 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0345 908 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524(InterPro)
Lcy7g0345 908 MobiDBLite consensus disorder prediction 36 51 - -
Lcy7g0345 908 MobiDBLite consensus disorder prediction 253 268 - -
Lcy7g0345 908 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 228 525 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Lcy7g0345 908 MobiDBLite consensus disorder prediction 107 124 - -
Lcy7g0345 908 MobiDBLite consensus disorder prediction 230 271 - -
Lcy7g0345 908 FunFam Aurora kinase A 267 356 - -
Lcy7g0345 908 MobiDBLite consensus disorder prediction 24 218 - -
Lcy7g0345 908 Gene3D Transferase(Phosphotransferase) domain 1 271 535 - -
Lcy7g0345 908 ProSiteProfiles Protein kinase domain profile. 275 532 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0345 908 CDD STKc_MAP4K3_like 274 525 - -
Lcy7g0345 908 SUPERFAMILY Protein kinase-like (PK-like) 272 530 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0345 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0345 Lcy-Chr7:2886853 Lcy9g1314 Lcy-Chr9:37904579 5.28E-72 dispersed
Lcy7g0345 Lcy-Chr7:2886853 Lcy9g0888 Lcy-Chr9:29709833 5.85E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1314 . 1 697 MAP Kinase Kinase Kinase Kinase AT1G53165 62.0 1.8e-220 763.1
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT1G53165 51.4 1.6e-64 245.0
Lcy9g1314 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.6 2.0e-232 802.7
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT3G15220 51.0 9.6e-65 245.7
Lcy7g0345 . 4 909 MAP Kinase Kinase Kinase Kinase AT1G69220 55.9 5.1e-235 811.6
Lcy9g1314 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.1e-67 253.8
Lcy10g1923 . 122 686 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 5.8e-216 748.0
Lcy6g2295 . 7 853 MAP Kinase Kinase Kinase Kinase AT4G24100 54.8 6.9e-231 797.7
Lcy10g1923 . 127 514 MAP Kinase Kinase Kinase Kinase AT4G24100 60.2 1.6e-134 477.6
Lcy6g2295 . 11 854 MAP Kinase Kinase Kinase Kinase AT4G10730 55.0 2.3e-231 799.3
Lcy10g1923 . 122 490 MAP Kinase Kinase Kinase Kinase AT1G70430 69.6 3.0e-147 519.6
Lcy12g0509 . 1 658 MAP Kinase Kinase Kinase Kinase AT1G79640 57.7 7.0e-206 714.5
Lcy10g1923 . 127 683 MAP Kinase Kinase Kinase Kinase AT1G79640 50.9 5.4e-150 528.9
Lcy10g1923 . 122 455 MAP Kinase Kinase Kinase Kinase AT1G23700 58.5 5.6e-104 375.6
Lcy11g1629 . 33 492 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 7.3e-144 508.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66067 None None None None Lcy PK