Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0378 ATGGATATTGGCGACAGAGATAAATTTAGACTAGAAAGTAGCTCAGAGGATTGTATTAACTATTCACATAGCATGTCTTCGGATTGGCGATTTGGCGAGACGACTCTCACGAGTATGCCGATGGGTTTGGTTTTGCCAGGGAATGTGGATATAGTTAGGAATCAGGATATGGTTGGTTGTGCTTCTTCCACTGCTCCTGTTGTAGAGTCATTTAGCTCTACTATCTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTGGCAACATTCAAGGCCATAACAACTGCAGTACTTCAAACACCATAGCAATTAACAAGGCCAGTCCAGTTTCTTTGAGCAGTGACATTGACAGAACTCTTGACATGAGCTGGAACCTAGCACATAATATGTTGAAAGGGGGAGTTTACCTACCTAATATTCCCGGTGTGCTCCCACCGAGCTTATCTCAACTTCCAGCTGATTCTTCATTCATTGAGCGTGCAGCCAGGCTCTCCTGCTTCAGTGGTGGAAATTTTGGTGATCTTGTAGGCCATTTCAACATTCCTGAGCCTATGGGTGTTTTTCCTAGAGGCATGGGAGTAATGCCTGAGAGACGAGATGATATTCCACGAAATGGGTTAGGTTTGGTATCTGGAACTGTAGGGCAATCTCAAAGAAACATGGTTAACAACGGTGAAGCTTCCAAGCCTGTTTCTTTGACCAATGAACATGGAGTTACTGAACAGGGTTCACCTAAAAATGGAAGCCCCTTGAAATTGGACGATCGTGGTATACATGCTGTTGATGGTTCTGTTAATGAATCTGATGAAGCCGAGTTTAGTGGAGGTGATGGTTCGGGTGAGCCATGTACATTAGAGGTCACAGGTAAGGAACTTTCTGCTAAGGGCCTTGGCGCGAGGAAAAGGAAAAGGAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTGCAACAAAATAGTGTTTCAGCTAAGGATAATACTGAAACTCCGCAAAAGGGAGATCCAATTCCGAGTTCAACCGCAAACAAGGGTACAGGAAAACATGGCAAACAGGCATCTCAACCTTCAGATCCACCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGGGGCCAGGCGACAAACAGCCATAGCCTTGCAGAAAGGGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACCGGAAAGGCAGTGATGCTAGATGAAATCATTAACTATGTCCAATCACTCCAACGACAAGTTGAGTTTTTATCGATGAAACTCGCTACCGTCAATCCAAGGTTGGATATCAACATCGATGGGCTCCTAGCCAAAGATATTCTTCAATCACGAGCTGGTCCATCGTCGACATTAGGATTTTCTTCACATTTACCCGTTGCTTGTCCCCCGCCACATATTTCACATCATGGACTCATCCCAGGCAGTTTTCCTGGCATAGGGAGCTCTGAGATGTTGAGAAGCACAGTAAGTTCCCAGATGACTCCAAGATCTGGTGGATTCAAGGAGCCTACTCAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGAATGTCCACTGCCCCCAATTGTTTAGAAGTTGAAGGATCTGATTCACCAGGCAATACAAAAGTTGAACATTGA 1683 44.68 MDIGDRDKFRLESSSEDCINYSHSMSSDWRFGETTLTSMPMGLVLPGNVDIVRNQDMVGCASSTAPVVESFSSTIWEQAANCQNLGIGNIQGHNNCSTSNTIAINKASPVSLSSDIDRTLDMSWNLAHNMLKGGVYLPNIPGVLPPSLSQLPADSSFIERAARLSCFSGGNFGDLVGHFNIPEPMGVFPRGMGVMPERRDDIPRNGLGLVSGTVGQSQRNMVNNGEASKPVSLTNEHGVTEQGSPKNGSPLKLDDRGIHAVDGSVNESDEAEFSGGDGSGEPCTLEVTGKELSAKGLGARKRKRSGQKTELDQANGPLQQNSVSAKDNTETPQKGDPIPSSTANKGTGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLLAKDILQSRAGPSSTLGFSSHLPVACPPPHISHHGLIPGSFPGIGSSEMLRSTVSSQMTPRSGGFKEPTQIKNVWDGELQNIVQMSFGMSTAPNCLEVEGSDSPGNTKVEH 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3190844 3194944 - Maker00025971 Lcy7g0378 637210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0378 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 424 IPR011598 GO:0046983(InterPro)
Lcy7g0378 560 MobiDBLite consensus disorder prediction 310 354 - -
Lcy7g0378 560 MobiDBLite consensus disorder prediction 210 247 - -
Lcy7g0378 560 FunFam Basic helix-loop-helix transcription factor 371 443 - -
Lcy7g0378 560 Gene3D - 371 444 IPR036638 GO:0046983(InterPro)
Lcy7g0378 560 MobiDBLite consensus disorder prediction 252 266 - -
Lcy7g0378 560 MobiDBLite consensus disorder prediction 199 362 - -
Lcy7g0378 560 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 148 536 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy7g0378 560 MobiDBLite consensus disorder prediction 295 309 - -
Lcy7g0378 560 CDD bHLH_AtBPE_like 364 449 - -
Lcy7g0378 560 SMART finulus 380 430 IPR011598 GO:0046983(InterPro)
Lcy7g0378 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 442 IPR036638 GO:0046983(InterPro)
Lcy7g0378 560 Pfam Helix-loop-helix DNA-binding domain 377 425 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1539 Lcy-Chr10:39809189 Lcy7g0378 Lcy-Chr7:3190844 5.18E-135 dispersed
Lcy13g2155 Lcy-Chr13:40466769 Lcy7g0378 Lcy-Chr7:3190844 3.46E-40 dispersed
Lcy3g1006 Lcy-Chr3:33992068 Lcy7g0378 Lcy-Chr7:3190844 1.13E-42 dispersed
Lcy3g1332 Lcy-Chr3:39631989 Lcy7g0378 Lcy-Chr7:3190844 3.33E-43 dispersed
Lcy5g0651 Lcy-Chr5:8040838 Lcy7g0378 Lcy-Chr7:3190844 2.57E-37 dispersed
Lcy7g0378 Lcy-Chr7:3190844 Lcy8g1118 Lcy-Chr8:37412607 3.69E-40 dispersed
Lcy7g0378 Lcy-Chr7:3190844 Lcy9g2004 Lcy-Chr9:44925824 2.89E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20381 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0378 - - - 0.0