Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0388 ATGGTTCCAATGGAAATTAGAATACAAGTTTCCATTTTCTTCTTCTTCTTGTGGAATTCTTCTGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTTTGAAGTGCAAGCCCTGATGGCCATTAAAGCTGCTCTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCTTGTAGCTGGAACATGATCACTTGTTCTCCAGAGAAATTTGTCATCAGCTTAGGAGCTCCAAGTCAGAACTTGTCGGGTAGCCTGTCGCCGAGCATCGGAAATTTGACCAATCTTCAGTCAGTGCTTTTACAGAACAACAATATATCAGGAACAATCCCAATGGAACTTGGGAACATACCAATGCTTGTCACTCTTGATCTTTCCAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTTCACATCTTAAGACTCTGCAATATCTGAGGTTAAATAACAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAATATGACTCAGCTGGCATTGCTGGACCTGTCTTTTAATAATCTGAGTGGCCCATTGCCCAAATTGTTGGCTAAAACCTACAACCTTGCTGGGAATTCGCTCATTTGCTCACCTGGGTCTGAGCATAGCTGCAATGGAACTGCACCACCACTCTTATTTACAGTCAATACGCCTCAAAAAGATCCACAGCCGTCTGGGAGATCCAAGGGCCACAAATTAGCCTTGGCTTTTGGCTCAAGTCTTGGATGCATTTTTCTGCTAACTGTTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAACGATTTGAATCAGTTTGCCTTGGGAACCTGAGGATTTTCCAGTTCAGAGAGCTTCAAGCTGCCACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGGTTTGGGAATGTATACAAAGGGTACCTTCAAGACGGAACAGTTATAGCTGTAAAGAGGCTAAAAGATGGAAATGCAATGAGAGGAGAGATTCAATTTCAGACTGAAGTTGAGATGATCAGCCTAGCCGTGCACCGGAACCTCCTCCGTCTCTACGGGTTCTGTATGACAACCACAGAGAGACTGTTGGTTTACCCATATATGTCCAATGGCAGCGTTGCATCTCGTCTCAAAGCGAAGCCAGCTCTGGACTGGAGCACGAGGAAAAGAATAGCATTGGGTGCAGCAAGAGGCTTACTGTATTTGCATGAGCAGTGTGACCCCAAGATTATACACAGAGACGTCAAGGCAGCAAATATTTTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTATCCACTGGCCAATCCTCTGAGAAAACTGATGTCTTTGGATTTGGAATCCTTCTCCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCAAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCACCAAGAAAAGAAGCTGGAAATATTAGTTGACAAGGATCTAAGGAACAATTACGACCGGATCGAGCTAGAAGAAATGGTTCAAGTAGCTCTCTTATGCACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGATCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGACAGATGCAAACAGATACAGAGTCAATGAGTTCTCTTCGGAGCGATATTCAGATCTGACAGACGACTCTTCCCTGCTTGCACAAGCCATGGAACTTTCTGGACCAAGATGA 1869 44.19 MVPMEIRIQVSIFFFFLWNSSVNGLLTAKGVNFEVQALMAIKAALKDPHSVLNWDENAVDPCSWNMITCSPEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQNNNISGTIPMELGNIPMLVTLDLSSNGFHGEIPTSLSHLKTLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPKLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFTVNTPQKDPQPSGRSKGHKLALAFGSSLGCIFLLTVGFGFFIWWRQRHNQQIFFDVNDQRFESVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVIRMLEGDGLAEKWEASQRTDANRYRVNEFSSERYSDLTDDSSLLAQAMELSGPR 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3288478 3294527 - Maker00025792 Lcy7g0388 637220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0388 622 Pfam Leucine Rich Repeat 171 190 IPR001611 GO:0005515(InterPro)
Lcy7g0388 622 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Lcy7g0388 622 Pfam Leucine Rich Repeat 123 144 IPR001611 GO:0005515(InterPro)
Lcy7g0388 622 Pfam Leucine Rich Repeat 98 119 IPR001611 GO:0005515(InterPro)
Lcy7g0388 622 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Lcy7g0388 622 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
Lcy7g0388 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 622 - -
Lcy7g0388 622 SUPERFAMILY Protein kinase-like (PK-like) 280 573 IPR011009 -
Lcy7g0388 622 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Lcy7g0388 622 ProSiteProfiles Protein kinase domain profile. 303 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0388 622 Pfam Protein tyrosine and serine/threonine kinase 306 572 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g0388 622 SMART serkin_6 303 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0388 622 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Lcy7g0388 622 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Lcy7g0388 622 FunFam Somatic embryogenesis receptor-like kinase 1 380 592 - -
Lcy7g0388 622 SUPERFAMILY L domain-like 34 203 - -
Lcy7g0388 622 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Lcy7g0388 622 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Lcy7g0388 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1527 Lcy-Chr10:39732833 Lcy7g0388 Lcy-Chr7:3288478 1.67E-288 dispersed
Lcy10g2086 Lcy-Chr10:44921008 Lcy7g0388 Lcy-Chr7:3288478 3.06E-71 dispersed
Lcy13g1261 Lcy-Chr13:29715591 Lcy7g0388 Lcy-Chr7:3288478 3.78E-239 dispersed
Lcy1g0260 Lcy-Chr1:2349628 Lcy7g0388 Lcy-Chr7:3288478 5.07E-180 dispersed
Lcy2g0208 Lcy-Chr2:1646940 Lcy7g0388 Lcy-Chr7:3288478 1.42E-211 dispersed
Lcy6g0974 Lcy-Chr6:10234575 Lcy7g0388 Lcy-Chr7:3288478 1.49E-162 dispersed
Lcy7g0388 Lcy-Chr7:3288478 Lcy9g0626 Lcy-Chr9:20737737 2.02E-161 dispersed
Lcy7g0388 Lcy-Chr7:3288478 Lcy7g0396 Lcy-Chr7:3370972 4.01E-77 proximal
Lcy10g2094 Lcy-Chr10:45009126 Lcy7g0388 Lcy-Chr7:3288478 2.53E-284 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66068 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0388 - - - 0.0