Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0397 ATGGGCGGCGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCATGTGGGAAAGCTTCTTTAAAGGCTGACCATTCACAAATTGGGGGTCCGGGGTTTTCTCGAGTTGTTTTCTGTAATGAACCAGGGTGTTTTGAGGCAGAAATTCGTAACTACATTGACAATTATGTTAGTACTACCAAGTATACTTTAGCTACTTTCCTGCCTAAGTCCTTGTTTGAGCAATTCAGGAGGGTGGCCAATTTCTACTTTTTAGTCAGTGGGATCCTTGCTTTTACTCCCCTTGCTCCTTACACGGCTGTCAGCGCGATTATCCCTCTTATTCTTGTCATTTCGGTGACAATGATCAAAGAAGGGATCGAAGATTTGAGGCGAAAAAAACAGGATATTCAGATTAACAATAGAAAGGTTAAAGCGCATCAAGGTGGTGGAGTTTTTGCTTATACAGAGTGGAAGAATCTGAGGGTGGGTAATATAGTGAGAGTGGAGAAGGATGAATTCTTTCCAGCAGATATCATCTTGCTTTCATCCAGTTATGAGGATGCAATCTGCTATGTTGAGACAATGAACCTTGATGGTGAGACAAATTTGAAACTAAAACAGGCATTGGAGGTAACTTCGCATATGAGTGAGGATTCTATGTTCAACAGCTTTAAGGCTACAATAAAATGTGAGGACCCAAATGCAAATTTATATTCTTTTGTTGGTAGTATGGAGTTGGAAGAGCAACAATATCCTCTATCTTCTCAACAACTACTCCTTCGAGACTCTAAACTCCGGAATACGGATTATATATATGGGGTTGTTGTCTTTACTGGTCGCGACACAAAGGTTATTCAAAATTCTACTGACCCGCCTTCAAAGAGAAGCAAAGTTGAGAGGAAGATGGATAAAATTATATATTTTTTGTTCTGTCTTCTATTTTTGCTTGCTCTTATAGGATCTATATTTTTTGGCTTTGTGACTGAAGATGATTTGGAAAATGGGAGAATGAAGAGATGGTATCTCAGGCCTGATGATGCTGTAGTTTTCTTTGATCCAAAAAGGTCTCCAATGGCTGCAATTTTCCATTTTCTTACCGCACTGATGTTGTATAACTACTTCATTCCAATCTCACTGTATGTATCAATAGAAATCGTCAAAGTTCTTCAGAGCATATTTATCAATCAAGATATTAATATGTACTATGAAGAAGCTGATAAACCTGCACGTGCTCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTCGATACTATACTTTCTGACAAGACTGGAACTCTGACCTGTAATTCAATGGAGTTCATTAAGTGTTCAGTGGCAGGGAGGGCTTATGGGCGTGGTTTCACAGAAGTAGAAAGGGCCATAGGTAGACAAAAAGATTCACCACTGCATGAAGCTGTAAATGGGGGGAATCACCAAGAGGATGTCACTAATAAAACTTCACATATCAAGGGCTTTAATTTTAAGGATGATAGGATTATGAATGGGAACTGGGTTAATGAGCCTCATGCAAATGTCATCCAAATGTTTTTCCGTCTTCTTGCAACTTGTCATACGGCAATACCTGAAATCCACGAGGACAGCAAAGAAGTTACTTATGAGGCTGAATCACCGGATGAAGCAGCATTTGTGATTGCAGCTAGGGAATTCGGCTTTGAGTTCTACAAAAGAACACAGACAAGCATATCACTGCATGAGTTTGATCCTTCATTGGGCAAGAAAGCTGATAGGACATATAGACTGCTGCATGTTCTGGAGTTTAATAGTTCAAGAAAGCGCATGTCTGTCATAGTAAGAAACGAGGAGGAGAAAATATTATTACTCTGTAAAGGTGCAGACAGTGTCATGTTTGAAAGACTTGGAAAGAATGGAAGGGAGTTTGAAGAGGAGACCAAGGAACATGTCAATGAGTATGCTGATGCAGGGTTGAGGACTTTGATACTTGCCTATCGTGAACTCGAAGAGGAAGAATACCAGGAATTTGATGACAAGTTCACTAAGGCCAAAAGTTCAGTTAGTGCAGATCGAGAATCATTGATAGATAAAGTAACCGACAAAATGGAGAGGAATCTAATTCTACTTGGTGCCACTGCTGTTGAGGACAAGCTCCAAAATGGGGTTCCTGACTGCATCGACAAGCTTGCTCAGGCAGGAATTAAGATTTGGGTTTTGACTGGGGACAAAATGGAGACCGCCATAAATATTGGGTATGGATACTTTTTCGCCTGTAGCTTACTAAGACAAGACATGAAGCAGATTGTTATTACTCTTGAGACATCAGAAATTCTGGCCCTAGAAAAGACAGGGGATAAGGCTTCTATCATCAAGGCATCAATGCAATGCGTCCGTGATCAGATTACTCGAGGGAGAGCTCAGCTTACTTCATCAAGTGGGCTATCTGAAGCATTTGCATTAATTATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACAGTATGAAGGCATCGTTTCTTGAGCTTGCGATATGTTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTAACAAGGTTAGTCAAATTTGGAACACGGAAAACAACTTTAGCTATCGGTGACGGTGCCAATGATGTAGGAATGCTTCAAGAAGCGGATATTGGAGTCGGAATTAGTGGTGCCGAAGGAATGCAGGCCGTTATGTCGAGTGATGTTGCAATTGCACAGTTTAAATATTTAGAGCGCCTGCTTCTTGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCTTATACGAAGCATTCACATCATTCTCTGGGCAAACTGCATATAATGATTGGTTTTTATCACTTTACAATGTTTTCTTCTCGTCGCTTCCAGTGGTAGCTTTGGGAGTTTTTGATCAGGACGTATCTGCAAGGCTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGCGCAGAATGTTCTTTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCCGTGATCATCTTCTTCCTATGCACAAGAGCACTCCAGCATCAGGCGTTCAACTCCGACGGGAAAACTGCAGGTCGGGACATTCTAGGTGCAACAATGTACTCTTGTGTTGTTTGGGTCGTGAACTTGCAAATGGCGCTCGCTGTTAGTTACTTCACCTTGATACAACATCTTTTCATCTGGGGTTCCATATCGATTTGGTACATTTTTCTACTGATTTATGGGTCCATGACCCCCACCTTTTCAACCAATGCTTACAAGATCTTCCTTGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTGCTTCTCTTTGTGGTGACCACAACACTTATTCCTTACTTCTCCTACTCAGCATTACAGATGAGGTTCTTTCCCATGTTTCATCAAATGATTTTATGGATTAGGAATGAAGGACAACTAGACAACCAAGGGTACTGTGATATTTTGCGGAACTACCGCACATTCCGATCAACGAGCGTGGGTTCCACAGCACGGTTAGCAGCCAAAAGGAACAACTCAAAGGAGAGAAACAAGACTGCTATTTGA 3603 41.27 MGGGRRRKLHFSKIYSFACGKASLKADHSQIGGPGFSRVVFCNEPGCFEAEIRNYIDNYVSTTKYTLATFLPKSLFEQFRRVANFYFLVSGILAFTPLAPYTAVSAIIPLILVISVTMIKEGIEDLRRKKQDIQINNRKVKAHQGGGVFAYTEWKNLRVGNIVRVEKDEFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMSEDSMFNSFKATIKCEDPNANLYSFVGSMELEEQQYPLSSQQLLLRDSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVERKMDKIIYFLFCLLFLLALIGSIFFGFVTEDDLENGRMKRWYLRPDDAVVFFDPKRSPMAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGRAYGRGFTEVERAIGRQKDSPLHEAVNGGNHQEDVTNKTSHIKGFNFKDDRIMNGNWVNEPHANVIQMFFRLLATCHTAIPEIHEDSKEVTYEAESPDEAAFVIAAREFGFEFYKRTQTSISLHEFDPSLGKKADRTYRLLHVLEFNSSRKRMSVIVRNEEEKILLLCKGADSVMFERLGKNGREFEEETKEHVNEYADAGLRTLILAYRELEEEEYQEFDDKFTKAKSSVSADRESLIDKVTDKMERNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGYGYFFACSLLRQDMKQIVITLETSEILALEKTGDKASIIKASMQCVRDQITRGRAQLTSSSGLSEAFALIIDGKSLSYALEDSMKASFLELAICCASVICCRSSPKQKALVTRLVKFGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQTAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGAQNVLFSWLRILSWMFNGLCSAVIIFFLCTRALQHQAFNSDGKTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYGSMTPTFSTNAYKIFLEVLAPGPSYWLVLLFVVTTTLIPYFSYSALQMRFFPMFHQMILWIRNEGQLDNQGYCDILRNYRTFRSTSVGSTARLAAKRNNSKERNKTAI 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3379038 3387018 - Maker00025864 Lcy7g0397 637229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0397 1200 CDD P-type_ATPase_APLT_Dnf-like 57 1026 - -
Lcy7g0397 1200 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 665 IPR023299 GO:0000166(InterPro)
Lcy7g0397 1200 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1154 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lcy7g0397 1200 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Lcy7g0397 1200 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Lcy7g0397 1200 SUPERFAMILY Calcium ATPase, transduction domain A 146 283 IPR008250 -
Lcy7g0397 1200 SFLD p-type atpase 408 917 IPR044492 -
Lcy7g0397 1200 SFLD Haloacid Dehalogenase 408 917 - -
Lcy7g0397 1200 Coils Coil 123 143 - -
Lcy7g0397 1200 FunFam Phospholipid-transporting ATPase 540 698 - -
Lcy7g0397 1200 FunFam Phospholipid-transporting ATPase 116 286 - -
Lcy7g0397 1200 NCBIfam phospholipid-translocating P-type ATPase 55 1150 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lcy7g0397 1200 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Lcy7g0397 1200 Gene3D - 699 906 IPR023214 -
Lcy7g0397 1200 Gene3D - 541 698 IPR023299 GO:0000166(InterPro)
Lcy7g0397 1200 Gene3D - 118 286 - -
Lcy7g0397 1200 Pfam Cation transport ATPase (P-type) 521 624 - -
Lcy7g0397 1200 NCBIfam HAD-IC family P-type ATPase 832 949 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy7g0397 1200 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Lcy7g0397 1200 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1144 IPR023298 -
Lcy7g0397 1200 Pfam Phospholipid-translocating P-type ATPase C-terminal 894 1144 IPR032630 -
Lcy7g0397 1200 FunFam Phospholipid-transporting ATPase 698 906 - -
Lcy7g0397 1200 SUPERFAMILY HAD-like 419 921 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2224 Lcy-Chr3:49065099 Lcy7g0397 Lcy-Chr7:3379038 0 dispersed
Lcy4g0675 Lcy-Chr4:8154723 Lcy7g0397 Lcy-Chr7:3379038 1.69E-137 dispersed
Lcy7g0228 Lcy-Chr7:1985149 Lcy7g0397 Lcy-Chr7:3379038 0 dispersed
Lcy7g0397 Lcy-Chr7:3379038 Lcy9g2037 Lcy-Chr9:45244753 1.38E-06 dispersed
Lcy10g0833 Lcy-Chr10:25521381 Lcy7g0397 Lcy-Chr7:3379038 0 wgd
Lcy5g2449 Lcy-Chr5:47270391 Lcy7g0397 Lcy-Chr7:3379038 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0397 K01530 - csv:101207148 2133.22