Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0420 ATGCGTGGGGAGGATCAAGAAGAGGAACATCATCATCATCTTCAAGGGGAGTGTTCACAAACTATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACAGCTACAAAACAACAACAACAACACTGATCATATCATGTATGGAGATCATCATCATGGAACTGGAAGAGGGTTGATTTTCCCAGCCGAAGTCGTGTCGCCGGTTCTGCAGCCGTGGCCGCCGCTCAACCCATTTCTGATCCCTCCTCCACCGCCGCCGCCACCGACATCATTATGCTCATCATCATCATATGGAAGTTTGTTTAACCGGCGACCTCCTAATTGTCTTCAGTTTGCTTATGATGGTCCATCTTCGGCGGACCACCTCGGCCGGATCATATCGACCACGCTTGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCCGAGCTCGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCACAGCGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAATCATCTCGCTAAGCTCCGGAGCTTACTTCCTAGTACCACTAAAATATTGGTTTTACTTATCTATTGTGAATCTTCCCTACTTCTTGCCAATGTAAAACTACGTTTACACATCGGTTCGAAGTATCGAGAGATTGATTATACTTTTCTAGCAACAAGGTATAATGGAGACAAAGCTTCACTGCTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACTTCATTGATAGCAGAAACAAGTCCAATCCCAACAGAAGTTGACGAGCTAACTGTGGACGACGCCTCCGACGAGATGACGACGATCAACGGCTCCAAATTTGTCATAAAGGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACGCTCAAATCCTTGCGTTTAAGAACCCTCAAAGCAGAAATCACAACCCTTGGTGGCCGTGTAAGAAATGTCTTGTTTGTCACCGGAGAAGACGATTCGACAACAACCGATAACAATCCGAACTCCGACGACCAAGAACAACAACAACAACAGCACAATATCAGCTCAATCCAAGAAGCACTGAAGGCTGTCATGGAAAAAACAGGAGGGGATGATTCTTCTTCAGCAAACATTAAAAGACAAAGGACAAATAACATCAATATCCTTTAA 1200 45.25 MRGEDQEEEHHHHLQGECSQTIENMFQEQLLLHQQLQNNNNNTDHIMYGDHHHGTGRGLIFPAEVVSPVLQPWPPLNPFLIPPPPPPPPTSLCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKILVLLIYCESSLLLANVKLRLHIGSKYREIDYTFLATRYNGDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDELTVDDASDEMTTINGSKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDSTTTDNNPNSDDQEQQQQQHNISSIQEALKAVMEKTGGDDSSSANIKRQRTNNINIL 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3631794 3634459 + Maker00025891 Lcy7g0420 637252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0420 399 SMART finulus 170 259 IPR011598 GO:0046983(InterPro)
Lcy7g0420 399 MobiDBLite consensus disorder prediction 339 364 - -
Lcy7g0420 399 Pfam Helix-loop-helix DNA-binding domain 167 253 IPR011598 GO:0046983(InterPro)
Lcy7g0420 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 253 IPR011598 GO:0046983(InterPro)
Lcy7g0420 399 PANTHER TRANSCRIPTION FACTOR BHLH30 139 393 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0420 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 259 IPR036638 GO:0046983(InterPro)
Lcy7g0420 399 Gene3D - 159 260 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0420 Lcy-Chr7:3631794 Lcy7g1401 Lcy-Chr7:22044513 3.14E-89 dispersed
Lcy7g0414 Lcy-Chr7:3558474 Lcy7g0420 Lcy-Chr7:3631794 5.24E-236 proximal
Lcy10g0891 Lcy-Chr10:27941587 Lcy7g0420 Lcy-Chr7:3631794 1.64E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20388 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0420 - - - 0.0