Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0437 ATGGACGGAATTTGCATTGACGAAACCACTTCCACTGAATCTCAATCCCAATCCACCACTTTTCCGGTGCTCGTCAAATCTCCGCCGCCGGAGACCAGCCTCTGCCGCCTCGGGAGCGGCGCCACCAGTGTGGTTCTCGACTCCGACTCCTCCAGCGGCGGCGGCGTCGAGGCCGAGTCCCGGAAACTTCCCTCCTCCCGTTACAAAGGAGTGGTCCCACAGCCCAACGGCCGCTGGGGGGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGGACCTTCAACGAAGAGGACGAAGCCGCACGTGCCTACGACGTGGCCGCCCAACGCTTCCGTGGCCGTGACGCCGTCACCAATTTCAAACCGTTATCTCACGGCGAAGAGGACGACGTCGTATCCGCCTTCCTCAACTCCCATTCCAAGGCCGAGATCGTCGACATGCTACGTAAGCACACCTACCTCGACGAGCTCCAGCAAAGCAAACGAAACGCCGGCTTATTCGGTTCGGATCGGAAACGAAACCGCTTCCTATCCGGTTCGGACAACGACCCGGAAACCGCCCGCGAACTTCTATTCGAAAAAGCCGTTACTCCAAGCGATGTGGGAAAATTGAACCGTCTAGTCATCCCAAAGCAACACGCCGAAAAGAACTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTCCTCTTGAACTTCGAAGACGGAGGCGGCAAAGTCTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTACGTGCTGACCAAAGGGTGGAGCCGGTTCGTGAAAGAAAAGAATCTGAAAGCCGGTGACATTGTGAGCTTCTTGAAATCGACCGGTCAAGACAAACAGCTTTACATCGAATGGAAGGCCAGAAAGGCTCCGGCCACAACCGGGTCCAACACGAACCCGGTTCAGACTGTGAGATTATTCGGAGTCGACATTATCAAAGTATCGCCAAATAGTGGGTGCAGTGAGAAGAGGAGAAGAGAAATGGAGTTTCTCGCTTTAGAATGTGCCAAAAAACAAAGGATAGTCGGAGCATTGTAA 1065 54.74 MDGICIDETTSTESQSQSTTFPVLVKSPPPETSLCRLGSGATSVVLDSDSSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHGEEDDVVSAFLNSHSKAEIVDMLRKHTYLDELQQSKRNAGLFGSDRKRNRFLSGSDNDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKAPATTGSNTNPVQTVRLFGVDIIKVSPNSGCSEKRRREMEFLALECAKKQRIVGAL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3855395 3856459 + Maker00009649 Lcy7g0437 637269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0437 354 Gene3D - 180 307 IPR015300 -
Lcy7g0437 354 SMART rav1_2 67 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0437 354 MobiDBLite consensus disorder prediction 7 26 - -
Lcy7g0437 354 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Lcy7g0437 354 ProSiteProfiles B3 DNA-binding domain profile. 193 298 IPR003340 GO:0003677(InterPro)
Lcy7g0437 354 MobiDBLite consensus disorder prediction 1 29 - -
Lcy7g0437 354 CDD AP2 66 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0437 354 CDD B3_DNA 192 280 IPR003340 GO:0003677(InterPro)
Lcy7g0437 354 SMART B3_2 193 298 IPR003340 GO:0003677(InterPro)
Lcy7g0437 354 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 320 IPR044800 GO:0003700(InterPro)
Lcy7g0437 354 Pfam B3 DNA binding domain 193 294 IPR003340 GO:0003677(InterPro)
Lcy7g0437 354 Pfam AP2 domain 66 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0437 354 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677(InterPro)
Lcy7g0437 354 SUPERFAMILY DNA-binding pseudobarrel domain 191 285 IPR015300 -
Lcy7g0437 354 MobiDBLite consensus disorder prediction 45 69 - -
Lcy7g0437 354 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0437 354 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1157 Lcy-Chr2:11588115 Lcy7g0437 Lcy-Chr7:3855395 2.95E-53 dispersed
Lcy6g0876 Lcy-Chr6:8911119 Lcy7g0437 Lcy-Chr7:3855395 4.74E-45 dispersed
Lcy7g0437 Lcy-Chr7:3855395 Lcy13g1039 Lcy-Chr13:22711472 4.81E-159 dispersed
Lcy10g0904 Lcy-Chr10:28501189 Lcy7g0437 Lcy-Chr7:3855395 1.13E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20390 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0437 K09287 - csv:101203784 619.772