Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0438 ATGTACAAGGAGCTGACGAAGACAACCAGACAGAAATATGACTGGAAAGTGGACTCCGGAGGCGAAACCGGCCAAAAGGTCGGGCCAAGGTCGGAGGGACCGGGCCTTGGCCCGACCCATATGGTCGGCCTCGACCCTTCCGCCTCCGTTCGTTCCCTGCTGCCTCTGGTCGCCCCGGTTCCACTTGGATTGAAGAAACATGTGAGGAATTCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGACGGTTAGGGGCATCAGGGACCGAAAGGAGGTGACCATGCTCGGCCTGCGTAAGCGGGCCGAATGGTCAGCCTCGGCCTCTTCCCGAGGCCGACCATATGGGTCGGGCCATGTTGGCCCGACCCTTTGGTCCGGTCTTCCTCTAGGTCGGTTTTCTGGTCCTACCTCTGCCCGATTCTCCTTGTGCGTCAGTGTGATTCCATTATTCGGCTTTCCAGCTCCTTCTCATTGGCTTGCTTCGGATTTTTCTATATCAATCTGGGTTTCTTCTTTTGCGATGGATTTCGTCGATAATGTTCTGGATATTCGAGTGGGAATGGATTTGAGGCACTATGCCGACGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTTCAGCGGGAACTTCCTCTCTGTTTGGAGCTTGTTACCAGAGCTATTGATTCTTGCCGGCAGCAGTTATCTGGGGTGTCGACGGCGAGTTCAGAGCATACTTCCAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAAGAAAGTTTCAGCCAAATCCAATTCTGAAAATGAAGAAGACGAACAATCTAAACCAGAGAAAATTGAAGTGGGTCGATTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCAATCGCCGGATCCTCCCGTTACAGAGGATGTCGCTAAGAAAACGACGTCGTCGGTTGTTGAGGTCCAAAAGAATGGCGGTGGCTGTGGCGGTGTCGGTGCTTTTCAGCCATTTCAGAAGGAGAAAATTCCATTGAAAACAGAGGCGGCGGCGATCGTCGGTAAAAAGGTCGGTTCTTCTCCAGTGCCGGAGGCGACGACGAGTTCGACAGCGGAAACCGCCTCCAAAGGGAGCGGCGGAACCAGTAAACGAGAAGATAAGGAATCTCAAACTCATAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCATGCCCTTCAACAACTCGGCGGCCCTCACGTTGCTACACCGAAACAAATCAGAGAGTTAATGAAGGTCGATGGGCTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGCCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTACCGCCGCCGCCGACGCCGCCGAAGTACGCGGCGACGACGACAACAGAAGGAAGAAATGGGATTTATGCTCCGGTGGCGACGGCGTTGCGACGGCCGAAGACGGCGGAGGAAGGGAAGGGGAGCCACAGCGGCGGAATGGTTCGTTCGAATTCGCCGGCGACGTCTTCCTCCACTCACACCACCACAACCTCGCCGGCGGCGGCGTAG 1611 54.44 MYKELTKTTRQKYDWKVDSGGETGQKVGPRSEGPGLGPTHMVGLDPSASVRSLLPLVAPVPLGLKKHVRNSEVFRDEPGGTGTVRGIRDRKEVTMLGLRKRAEWSASASSRGRPYGSGHVGPTLWSGLPLGRFSGPTSARFSLCVSVIPLFGFPAPSHWLASDFSISIWVSSFAMDFVDNVLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTASSEHTSSDGPVLEEFIPIKKVSAKSNSENEEDEQSKPEKIEVGRLDWLKSAQLWNQSPDPPVTEDVAKKTTSSVVEVQKNGGGCGGVGAFQPFQKEKIPLKTEAAAIVGKKVGSSPVPEATTSSTAETASKGSGGTSKREDKESQTHRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSPPQQFVVVGSIWVPPPPTPPKYAATTTTEGRNGIYAPVATALRRPKTAEEGKGSHSGGMVRSNSPATSSSTHTTTTSPAAA 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3862688 3866825 + Maker00009748 Lcy7g0438 637270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0438 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 381 441 IPR017930 -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 369 388 - -
Lcy7g0438 536 Pfam Myb-like DNA-binding domain 386 437 IPR001005 -
Lcy7g0438 536 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 189 505 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0438 536 MobiDBLite consensus disorder prediction 1 41 - -
Lcy7g0438 536 Coils Coil 190 210 - -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 512 536 - -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 1 19 - -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 347 388 - -
Lcy7g0438 536 SUPERFAMILY Homeodomain-like 381 441 IPR009057 -
Lcy7g0438 536 Gene3D - 383 440 - -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 351 368 - -
Lcy7g0438 536 NCBIfam myb-like DNA-binding domain, SHAQKYF class 384 439 IPR006447 GO:0003677(InterPro)
Lcy7g0438 536 MobiDBLite consensus disorder prediction 473 536 - -
Lcy7g0438 536 FunFam Myb family transcription factor 383 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0438 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0781 Lcy-Chr2:6945216 Lcy7g0438 Lcy-Chr7:3862688 1.78E-47 dispersed
Lcy4g2142 Lcy-Chr4:47924422 Lcy7g0438 Lcy-Chr7:3862688 8.86E-46 dispersed
Lcy7g0438 Lcy-Chr7:3862688 Lcy9g2305 Lcy-Chr9:47461603 1.13E-31 dispersed
Lcy7g0438 Lcy-Chr7:3862688 Lcy10g0975 Lcy-Chr10:31313088 4.87E-75 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy12g0279 . 1 190 G2-like Transcription Factor Family AT5G16560 56.1 6.7e-42 169.1
Lcy12g1970 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 5.7e-41 166.0
Lcy12g1970 . 196 389 G2-like Transcription Factor Family AT4G17695 50.3 1.5e-36 151.0
Lcy13g2020 . 8 151 G2-like Transcription Factor Family AT5G42630 64.2 2.2e-42 169.9
Lcy9g2153 . 10 182 G2-like Transcription Factor Family AT5G42630 58.2 1.1e-41 167.5
Lcy10g0975 . 20 261 G2-like Transcription Factor Family AT1G25550 56.3 1.8e-54 210.3
Lcy7g0438 . 193 434 G2-like Transcription Factor Family AT1G25550 50.2 5.8e-53 205.3
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT5G05090 57.0 2.0e-74 276.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT5G05090 57.5 5.3e-72 268.5
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy8g1657 . 1 333 G2-like Transcription Factor Family AT1G79430 55.8 2.3e-78 290.0
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT3G10760 62.6 1.7e-91 333.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT3G10760 58.8 2.5e-87 319.7
Lcy1g1774 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.5e-60 230.3
Lcy12g2089 . 243 460 G2-like Transcription Factor Family AT2G20400 50.2 1.1e-44 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20391 None None None None Lcy TF