Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0438 ATGTACAAGGAGCTGACGAAGACAACCAGACAGAAATATGACTGGAAAGTGGACTCCGGAGGCGAAACCGGCCAAAAGGTCGGGCCAAGGTCGGAGGGACCGGGCCTTGGCCCGACCCATATGGTCGGCCTCGACCCTTCCGCCTCCGTTCGTTCCCTGCTGCCTCTGGTCGCCCCGGTTCCACTTGGATTGAAGAAACATGTGAGGAATTCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGACGGTTAGGGGCATCAGGGACCGAAAGGAGGTGACCATGCTCGGCCTGCGTAAGCGGGCCGAATGGTCAGCCTCGGCCTCTTCCCGAGGCCGACCATATGGGTCGGGCCATGTTGGCCCGACCCTTTGGTCCGGTCTTCCTCTAGGTCGGTTTTCTGGTCCTACCTCTGCCCGATTCTCCTTGTGCGTCAGTGTGATTCCATTATTCGGCTTTCCAGCTCCTTCTCATTGGCTTGCTTCGGATTTTTCTATATCAATCTGGGTTTCTTCTTTTGCGATGGATTTCGTCGATAATGTTCTGGATATTCGAGTGGGAATGGATTTGAGGCACTATGCCGACGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTTCAGCGGGAACTTCCTCTCTGTTTGGAGCTTGTTACCAGAGCTATTGATTCTTGCCGGCAGCAGTTATCTGGGGTGTCGACGGCGAGTTCAGAGCATACTTCCAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAAGAAAGTTTCAGCCAAATCCAATTCTGAAAATGAAGAAGACGAACAATCTAAACCAGAGAAAATTGAAGTGGGTCGATTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCAATCGCCGGATCCTCCCGTTACAGAGGATGTCGCTAAGAAAACGACGTCGTCGGTTGTTGAGGTCCAAAAGAATGGCGGTGGCTGTGGCGGTGTCGGTGCTTTTCAGCCATTTCAGAAGGAGAAAATTCCATTGAAAACAGAGGCGGCGGCGATCGTCGGTAAAAAGGTCGGTTCTTCTCCAGTGCCGGAGGCGACGACGAGTTCGACAGCGGAAACCGCCTCCAAAGGGAGCGGCGGAACCAGTAAACGAGAAGATAAGGAATCTCAAACTCATAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCATGCCCTTCAACAACTCGGCGGCCCTCACGTTGCTACACCGAAACAAATCAGAGAGTTAATGAAGGTCGATGGGCTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGCCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTACCGCCGCCGCCGACGCCGCCGAAGTACGCGGCGACGACGACAACAGAAGGAAGAAATGGGATTTATGCTCCGGTGGCGACGGCGTTGCGACGGCCGAAGACGGCGGAGGAAGGGAAGGGGAGCCACAGCGGCGGAATGGTTCGTTCGAATTCGCCGGCGACGTCTTCCTCCACTCACACCACCACAACCTCGCCGGCGGCGGCGTAG 1611 54.44 MYKELTKTTRQKYDWKVDSGGETGQKVGPRSEGPGLGPTHMVGLDPSASVRSLLPLVAPVPLGLKKHVRNSEVFRDEPGGTGTVRGIRDRKEVTMLGLRKRAEWSASASSRGRPYGSGHVGPTLWSGLPLGRFSGPTSARFSLCVSVIPLFGFPAPSHWLASDFSISIWVSSFAMDFVDNVLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTASSEHTSSDGPVLEEFIPIKKVSAKSNSENEEDEQSKPEKIEVGRLDWLKSAQLWNQSPDPPVTEDVAKKTTSSVVEVQKNGGGCGGVGAFQPFQKEKIPLKTEAAAIVGKKVGSSPVPEATTSSTAETASKGSGGTSKREDKESQTHRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSPPQQFVVVGSIWVPPPPTPPKYAATTTTEGRNGIYAPVATALRRPKTAEEGKGSHSGGMVRSNSPATSSSTHTTTTSPAAA 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3862688 3866825 + Maker00009748 Lcy7g0438 637270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0438 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 381 441 IPR017930 -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 369 388 - -
Lcy7g0438 536 Pfam Myb-like DNA-binding domain 386 437 IPR001005 -
Lcy7g0438 536 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 189 505 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0438 536 MobiDBLite consensus disorder prediction 1 41 - -
Lcy7g0438 536 Coils Coil 190 210 - -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 512 536 - -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 1 19 - -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 347 388 - -
Lcy7g0438 536 SUPERFAMILY Homeodomain-like 381 441 IPR009057 -
Lcy7g0438 536 Gene3D - 383 440 - -
Lcy7g0438 536 MobiDBLite consensus disorder prediction 351 368 - -
Lcy7g0438 536 NCBIfam myb-like DNA-binding domain, SHAQKYF class 384 439 IPR006447 GO:0003677(InterPro)
Lcy7g0438 536 MobiDBLite consensus disorder prediction 473 536 - -
Lcy7g0438 536 FunFam Myb family transcription factor 383 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0781 Lcy-Chr2:6945216 Lcy7g0438 Lcy-Chr7:3862688 1.78E-47 dispersed
Lcy4g2142 Lcy-Chr4:47924422 Lcy7g0438 Lcy-Chr7:3862688 8.86E-46 dispersed
Lcy7g0438 Lcy-Chr7:3862688 Lcy9g2305 Lcy-Chr9:47461603 1.13E-31 dispersed
Lcy7g0438 Lcy-Chr7:3862688 Lcy10g0975 Lcy-Chr10:31313088 4.87E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20391 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0438 - - - 0.0