Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g0438 | ATGTACAAGGAGCTGACGAAGACAACCAGACAGAAATATGACTGGAAAGTGGACTCCGGAGGCGAAACCGGCCAAAAGGTCGGGCCAAGGTCGGAGGGACCGGGCCTTGGCCCGACCCATATGGTCGGCCTCGACCCTTCCGCCTCCGTTCGTTCCCTGCTGCCTCTGGTCGCCCCGGTTCCACTTGGATTGAAGAAACATGTGAGGAATTCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGACGGTTAGGGGCATCAGGGACCGAAAGGAGGTGACCATGCTCGGCCTGCGTAAGCGGGCCGAATGGTCAGCCTCGGCCTCTTCCCGAGGCCGACCATATGGGTCGGGCCATGTTGGCCCGACCCTTTGGTCCGGTCTTCCTCTAGGTCGGTTTTCTGGTCCTACCTCTGCCCGATTCTCCTTGTGCGTCAGTGTGATTCCATTATTCGGCTTTCCAGCTCCTTCTCATTGGCTTGCTTCGGATTTTTCTATATCAATCTGGGTTTCTTCTTTTGCGATGGATTTCGTCGATAATGTTCTGGATATTCGAGTGGGAATGGATTTGAGGCACTATGCCGACGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTTCAGCGGGAACTTCCTCTCTGTTTGGAGCTTGTTACCAGAGCTATTGATTCTTGCCGGCAGCAGTTATCTGGGGTGTCGACGGCGAGTTCAGAGCATACTTCCAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAAGAAAGTTTCAGCCAAATCCAATTCTGAAAATGAAGAAGACGAACAATCTAAACCAGAGAAAATTGAAGTGGGTCGATTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCAATCGCCGGATCCTCCCGTTACAGAGGATGTCGCTAAGAAAACGACGTCGTCGGTTGTTGAGGTCCAAAAGAATGGCGGTGGCTGTGGCGGTGTCGGTGCTTTTCAGCCATTTCAGAAGGAGAAAATTCCATTGAAAACAGAGGCGGCGGCGATCGTCGGTAAAAAGGTCGGTTCTTCTCCAGTGCCGGAGGCGACGACGAGTTCGACAGCGGAAACCGCCTCCAAAGGGAGCGGCGGAACCAGTAAACGAGAAGATAAGGAATCTCAAACTCATAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCATGCCCTTCAACAACTCGGCGGCCCTCACGTTGCTACACCGAAACAAATCAGAGAGTTAATGAAGGTCGATGGGCTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGCCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTACCGCCGCCGCCGACGCCGCCGAAGTACGCGGCGACGACGACAACAGAAGGAAGAAATGGGATTTATGCTCCGGTGGCGACGGCGTTGCGACGGCCGAAGACGGCGGAGGAAGGGAAGGGGAGCCACAGCGGCGGAATGGTTCGTTCGAATTCGCCGGCGACGTCTTCCTCCACTCACACCACCACAACCTCGCCGGCGGCGGCGTAG | 1611 | 54.44 | MYKELTKTTRQKYDWKVDSGGETGQKVGPRSEGPGLGPTHMVGLDPSASVRSLLPLVAPVPLGLKKHVRNSEVFRDEPGGTGTVRGIRDRKEVTMLGLRKRAEWSASASSRGRPYGSGHVGPTLWSGLPLGRFSGPTSARFSLCVSVIPLFGFPAPSHWLASDFSISIWVSSFAMDFVDNVLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTASSEHTSSDGPVLEEFIPIKKVSAKSNSENEEDEQSKPEKIEVGRLDWLKSAQLWNQSPDPPVTEDVAKKTTSSVVEVQKNGGGCGGVGAFQPFQKEKIPLKTEAAAIVGKKVGSSPVPEATTSSTAETASKGSGGTSKREDKESQTHRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSPPQQFVVVGSIWVPPPPTPPKYAATTTTEGRNGIYAPVATALRRPKTAEEGKGSHSGGMVRSNSPATSSSTHTTTTSPAAA | 536 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3862688 | 3866825 | + | Maker00009748 | Lcy7g0438 | 637270 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g0438 | 536 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 381 | 441 | IPR017930 | - | |
Lcy7g0438 | 536 | MobiDBLite | consensus disorder prediction | 369 | 388 | - | - | |
Lcy7g0438 | 536 | Pfam | Myb-like DNA-binding domain | 386 | 437 | IPR001005 | - | |
Lcy7g0438 | 536 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 189 | 505 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy7g0438 | 536 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Lcy7g0438 | 536 | Coils | Coil | 190 | 210 | - | - | |
Lcy7g0438 | 536 | MobiDBLite | consensus disorder prediction | 512 | 536 | - | - | |
Lcy7g0438 | 536 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Lcy7g0438 | 536 | MobiDBLite | consensus disorder prediction | 347 | 388 | - | - | |
Lcy7g0438 | 536 | SUPERFAMILY | Homeodomain-like | 381 | 441 | IPR009057 | - | |
Lcy7g0438 | 536 | Gene3D | - | 383 | 440 | - | - | |
Lcy7g0438 | 536 | MobiDBLite | consensus disorder prediction | 351 | 368 | - | - | |
Lcy7g0438 | 536 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 384 | 439 | IPR006447 | GO:0003677(InterPro) | |
Lcy7g0438 | 536 | MobiDBLite | consensus disorder prediction | 473 | 536 | - | - | |
Lcy7g0438 | 536 | FunFam | Myb family transcription factor | 383 | 441 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0781 | Lcy-Chr2:6945216 | Lcy7g0438 | Lcy-Chr7:3862688 | 1.78E-47 | dispersed | |
Lcy4g2142 | Lcy-Chr4:47924422 | Lcy7g0438 | Lcy-Chr7:3862688 | 8.86E-46 | dispersed | |
Lcy7g0438 | Lcy-Chr7:3862688 | Lcy9g2305 | Lcy-Chr9:47461603 | 1.13E-31 | dispersed | |
Lcy7g0438 | Lcy-Chr7:3862688 | Lcy10g0975 | Lcy-Chr10:31313088 | 4.87E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20391 | None | None | None | None | Lcy | TF |
Pathway information
