Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0487 CACCACCCAAAAATCTCTCCACTTCGAACCTCCGCTTTCCATGGTTTGCTACAAAACAAACCACCCAATATTCCATGCCGAAAGCACACCAAAGTTTCTAACAATCGAATTCCGCAACTCCAACCACAGCTTTTCAGAAATCCCACGTACATCATTTCCTCCTTCATGCTAACCACGTTTACGCCCATTCATAACAGCGACCGTGGTGGAGCCGTCGTCGCCATGGCTGCTGCTCCCGTGAACTCGTCAATGGAATCATCTTCCAGAATCCTCGCCTTGGAATCTCCTATTCTCATATTTGTTTTCTTTCACAAGGCTATCCGCGCTGAGCTTGATCGGTTCCATCGCGACTCCATGGAATTCGCCACCAACCAGCAAAGTGGCGGCGATATTGCGCCGTTGTTGCAGCGCTACCACTTCCTTCGAGCTCTTTATAAGCATCACTGTAACGCTGAGGACGAGGTCATCTTCCCGGCTCTAGATCAGCGAGTGAAAAATGTGGCAAGTACTTATTTCCTTGAACATGAAGGGGAAAGTGTTCTGTTTTGCCAATTGCTTGAGCTTCTGAATTCAAATGCGTTGGAGGAAGGAAGCTATAAGAGGGAGCTGTCATCTTGTGTCAGAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAGGAGGAACAGGTGTTTCCGTTACTTGTTGAGAAGTTTTCTTTTCAAGAACAGGCATCCTTAGTATGGAAATTTCTTTGTAGTATACCTATTAAAATGCTGGAAGTCTTTCTTCCGTGGCTTTCTTCCTCTATATCTCCAGATGAACATCAGATTATGTGCAAATGCTTGAGCAAAATTATCCCCGAGCAAAAGCTTCTTCAGAAGGTAATATTTTCCTGGATGGAGGATGCAAGAACGACTCATGCCAATCAAAAATTGTATGGTGACAATTTAGAGTTTCAATGTTTAGGCACTCAGGTCTGTGATCTTATGTGTAGGCCAGAGAAGGGGACTGACACTTCTGAATCAACTAGAACTGGTAAAAGGAAATATGTGGAGCAAATTAATTTTACCTATTCTAATGTTTCAGTTGCTTGTCCCATCAACGAAATATGTCATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGAGATCTTCCATTGTCTTCTGATTTTTCTGAGTTGTCTGCGCTTAAGGAGAGGCTGCAGTTTATTGCAGAAGTCTGCATCTTCCACTGCATTGCCGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCTTTTGCTGATCAGCATGCTGAAGAAGAAATTCAATTTGATAAGCTTAGGCACTTGATAGAAAGTATCCAATCCGATAGAGCTAAATATACTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACTATACAAAAGCACTTCCATGATGAGGAAATGCATGTTCTTCCACTTGCTCGGAAGCATTTTGGCCCCCAGAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAAGCCAGATCTTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCGGATCATGCACTCGTTACACTATTTTCCGGTTGGGCATGTAAAGGCCATCCCAGGAGCATTTGTTTTTCTGCAAGTGCTATTAACTATTGTCCTGAACGGATATTGACTGAAGATGAAGAATCATGCTCCTTTTCTCCTGCCAGGGAAAAACCTTCATGCAATCAGGCAACTGAGTGTGCCAGGCCATCCAAGTCTGGGAAGGCAGTATGCCATGGAGACTTAAATGGCCGATCTCCTTTGAAAAACCCGAGCAAAAAACTTCATTTCACTCGTGTAAAACAATCTGCTTGTGTCCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGATCTTTGGCAGCAGCAAAATCACTGCGCTCTTTGTGTTTTGGACCCTATGCTCCTTCTCTCAACTCCGGTCTCTTTAGTCTAGAAAATGATCCAATCTCTTGTAGCAGTGGTTCTAAGTCAAGGCCAATTGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTCGGTGATTGCAATGATAATTTCTTTAGGCAATTTTGTGGTAGGTTTCATCTGTTGTGGGGTCTGTATAAAGCTCATAGTAATGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTGAGCCACTCCTATACGTTAGACCACAAACAGGAGGAAGAGCTATTTGAAGGTATTTCTGCTGCACTTTCTAAGCTGACAAACCTTCGCAGAGACTTGAATGGTAAGAAAAAACACAACCATTCAGATTGGGTGAAGTCTCATACCTCTGATATTGATGATACTGCGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAAATCAATTAGAGTGACACTTGACCAACATATTTTTCGTGAGGAATCGGAATTGTTGCCGTTGTTCCATTTATATTTTTCTCTGGAAGAACAAGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGATCTGAAGCATCTCCACATTATATGGAATCTGTCAGTCATATACCTGGAGATTCTGATTCCCATAGCATATGTGATCAAAAAGATGATTCGGTTTTCAAGCCAGGATGGAAAGAAATTTTTAGGATGAACGAAAATGAACTTGAATCAGAAATAAGAAAGGTTGCTCGGGATTCAAGCATTGATCCTAGGAGAAAAGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCCTCTCAGCAGATGCTACCCCAAACAACTACAGGTGAAAACTCAGATGCAAACAAACTGATCGCAAGTGCCCCATCATTTCGTGACCCTAAGAAACAGATTTTTGGGTGTGAGCATTATAAAAGAAATTGTAAACTGCTTGCAACCTGTTGTGGCAAGTTTTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTATTGGATCTGTTTGCACAACACCATCCTGTGGTGGTTTCTCTATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGATGATGAAAGTGAAAGTGTTAGAGCTCTTCCTTGTGGACATTTCATGCATTCAGCTTGTTTTCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGCAGCAAGTCCTTAGGAGATATGACGGTGTACTTTGGCATGCTTGACGCATTACTGGCATTGGAGGTACTCCCTGAAGAATACAGGGAACGCTGTCAGGATATATTGTGCAATGACTGCTCCAAGAAGGGGAAAGCTCGCTTCCACTGGCTGTACCATAAATGTGGAAATTGTGGATCTTATAATACCAAGGTGATTAAGGTTAGCTCAAGTTCCTGCTCAACATTGAATTAG 3696 41.5 HHPKISPLRTSAFHGLLQNKPPNIPCRKHTKVSNNRIPQLQPQLFRNPTYIISSFMLTTFTPIHNSDRGGAVVAMAAAPVNSSMESSSRILALESPILIFVFFHKAIRAELDRFHRDSMEFATNQQSGGDIAPLLQRYHFLRALYKHHCNAEDEVIFPALDQRVKNVASTYFLEHEGESVLFCQLLELLNSNALEEGSYKRELSSCVRALQISICQHMFKEEEQVFPLLVEKFSFQEQASLVWKFLCSIPIKMLEVFLPWLSSSISPDEHQIMCKCLSKIIPEQKLLQKVIFSWMEDARTTHANQKLYGDNLEFQCLGTQVCDLMCRPEKGTDTSESTRTGKRKYVEQINFTYSNVSVACPINEICHWHNAIKKELNSIAEAARDLPLSSDFSELSALKERLQFIAEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDKLRHLIESIQSDRAKYTSAEIHKKLSSHADQIIKTIQKHFHDEEMHVLPLARKHFGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPVSDHALVTLFSGWACKGHPRSICFSASAINYCPERILTEDEESCSFSPAREKPSCNQATECARPSKSGKAVCHGDLNGRSPLKNPSKKLHFTRVKQSACVPGLGVDDNNLGMRSLAAAKSLRSLCFGPYAPSLNSGLFSLENDPISCSSGSKSRPIDNIFKFHKAISKDLEYLDNESVNLGDCNDNFFRQFCGRFHLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISAALSKLTNLRRDLNGKKKHNHSDWVKSHTSDIDDTARMNIELATKLQGMCKSIRVTLDQHIFREESELLPLFHLYFSLEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQATRNTMFSDWLNEWWEGSEASPHYMESVSHIPGDSDSHSICDQKDDSVFKPGWKEIFRMNENELESEIRKVARDSSIDPRRKDYLIQNLMTSRWIASQQMLPQTTTGENSDANKLIASAPSFRDPKKQIFGCEHYKRNCKLLATCCGKFFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPIGSVCTTPSCGGFSMAKYYCSICKLFDDESESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYRERCQDILCNDCSKKGKARFHWLYHKCGNCGSYNTKVIKVSSSSCSTLN 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4323019 4331433 - Maker00009686 Lcy7g0487 637319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0487 1231 Gene3D nmb1532 protein domain like 95 247 - -
Lcy7g0487 1231 Gene3D nmb1532 protein domain like 365 508 - -
Lcy7g0487 1231 FunFam Zinc finger protein BRUTUS 696 926 - -
Lcy7g0487 1231 Pfam Zinc-ribbon 1161 1218 IPR039512 -
Lcy7g0487 1231 SUPERFAMILY RING/U-box 1112 1160 - -
Lcy7g0487 1231 CDD Hr-like 368 491 - -
Lcy7g0487 1231 Pfam Hemerythrin HHE cation binding domain 701 862 IPR012312 -
Lcy7g0487 1231 Pfam Hemerythrin HHE cation binding domain 367 493 IPR012312 -
Lcy7g0487 1231 Pfam Hemerythrin HHE cation binding domain 99 229 IPR012312 -
Lcy7g0487 1231 CDD Hr-like 99 227 - -
Lcy7g0487 1231 SUPERFAMILY CHY zinc finger-like 1038 1101 IPR037274 GO:0008270(InterPro)
Lcy7g0487 1231 CDD Hr-like 705 861 - -
Lcy7g0487 1231 Gene3D nmb1532 protein domain like 695 923 - -
Lcy7g0487 1231 FunFam Zinc finger protein-related isoform 1 1110 1158 - -
Lcy7g0487 1231 ProSiteProfiles Zinc finger CHY-type profile. 1038 1107 IPR008913 GO:0008270(InterPro)
Lcy7g0487 1231 Gene3D - 1185 1227 - -
Lcy7g0487 1231 Pfam Ring finger domain 1115 1155 IPR001841 -
Lcy7g0487 1231 SMART ring_2 1115 1155 IPR001841 -
Lcy7g0487 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1109 1165 IPR013083 -
Lcy7g0487 1231 Pfam CHY zinc finger 1045 1113 IPR008913 GO:0008270(InterPro)
Lcy7g0487 1231 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 736 1125 - -
Lcy7g0487 1231 ProSiteProfiles Zinc finger RING-type profile. 1115 1156 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0602 Lcy-Chr2:5146359 Lcy7g0487 Lcy-Chr7:4323019 5.69E-214 dispersed
Lcy7g0487 Lcy-Chr7:4323019 Lcy9g1805 Lcy-Chr9:43183721 6.58E-06 dispersed
Lcy2g0424 Lcy-Chr2:3555866 Lcy7g0487 Lcy-Chr7:4323019 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0487 K16276 - csv:101217252 1938.31