Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0488 ATGGCGGCGTCTGCTCTGCTGTTGCATTTAGCTCTTTGTCTCTGTTTACTCTATTCTACACGTCTTTATGCCTCTCCGAACCCAGATTTAGACGCTTTAATGGCGTTCAAAGCGGCGTCTGATAAAGGGAACAAGCTCACCACATGGAACTTTACTTCTGACCCATGTGCTTGGGATGGAGTCTCTTGCCTCAGAAACAGGGTCTCGAGGTTGGTTCTTGAGAATCTTGAGCTTACAGGCTCCATCGGACCTCTTACTGCTTTGACTCAGTTACGAGTGCTGAGCCTTAAACGGAACCGTCTCTCCGGTCCCATTCCCGATCTCTCCAACTTCACAGCTCTCAAACTCGTGTTTCTCTCGTACAATCAATTTTCCGGCGACTTTCCGGCGTCTTTGCTGTCTCTCGTCCGGCTCTATCGTCTCGATCTCTCTCACAATAACTTGACCGGAGAGATTCCGGCTTCTGTTAACCGTTTGACTCATCTTCTCACTCTACGGCTCGAAGATAACCGGTTTTCTGGTTCCATCTTGGAACTGAACCTCCCGAATCTTCAGGAGTTCAACATTTCAGCGAACCGTCTCTCCGGCGAAATCCCCAAATCGTTGTCGACGTTCCCTGGGTCGTCTTTTGGCCAGAACGTGGGTTTGTGTGGATCTCCTCTTCAGAGCTGCAAGAGCATTGTCAGTAACCCGACGGAACCCGGATCCGAAGGAGCACTTGCCTCGCCCATAACACCGCCGCGGAACCTCACCGTTTCATCTTCTCCGACTTCGCTTCCCGGAGTTACAGCCGAAACAAAGCCGGAAAACACCCACCACAACAGCACCGGGAAGATAGGTTCTCTAGCGCTAATCGCCATAATTCTCGGCGACGTTTTGGTGCTAGCGGTGGTCTCGCTTCTTCTCTACTGCTATTTCTGGAGAAACTCTTCTGACAAAGCCCGAGACGGGAAGGGCTCGAAGCTTCTCGAAAGCGAGAAGATCGTTTACTCTTCCAGTCCATATCCGGCCCAGGCCGGAACAGAGAGAGGCCGGATGGTGTTCTTCGAGGGGGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCGGCGGAAATGCTCGGAAAAGGTGGGTTCGGAACTTCGTATAAGGCGATTCTCGACGACGGCAACGTGGTGGCGGTGAAACGGCTGAAAGACGCGCAGGTCGGAGGCAAACGAGAGTTCGAGCAGCATATGGAGGTGTTGGGAAGGTTGAGACATGCGAATATCGTAAGCTTGAGAGCTTACTACTTTGCAAGAGAGGAGAAGTTATTGGTTTATGATTACATGCCCAATGGCAGCTTGTTCTGGCTTCTTCACGGGAACAGAGGCCCCGGACGGACGCCGTTGGACTGGACGACGAGGTTGAAGATCGCCGCCGGGGCGGCTAGAGGACTGGCCTTCATTCACAACTCCTGCAAGTCGCTCAGACTCTCCCATGGCAATGTTAAATCCACTAACGTTCTTCTGGACCAATCGGGTAATGCTCGAGTCTCCGATTTCGGACTGTCCCTTTTCACTCCCCCGTCCACTCCTCGATCCAACGGCTACCGGGCGCCGGAGTGCGGCGAGGGCCGGAAACTGACGCAGAAATCCGACGTGTACTCATTTGGGGTTCTTCTCCTCGAGCTGCTCACCGGAAAGTGCCCATCCGTGGTGGAGAATGGCGGGCCGGGAGGCGGTGGATACGGCGGCGTGTTGGATTTGCCCCGGTGGGTTCAGTCGGTGGTGAGAGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTTGGGCTTCTGCAGATTGCCCTGGCTTGTACTTCGGCTTCGCCAGATCAACGGCCGAAGATGAGCCACGTTGTGAAGATGATCGACGAGCTTCGTGGAGTGGAGGTGTCGCCGTTCCACGACGGCTCCGACTCGGTGACGGAGTCGCCGTCGGTGTCGGAGGGCACTTGCGGTGGAGGAGTCAGCCATGTGATCCATGGTAGAGCTAGTGACAAATGTGAATGGATTCATCGATACATCAAGAAGTTCCATCGTGCTAATTTTGGTGCCCTAGTGACAGGTGGCAGAGACAAGAGCTTCTATATTGGCAGTATGGTTGCTAATGCGATGGTTATTAATGTGGATGTTGCATGTGATGAAAGTCGCAGGACATTTAGTTTTGGGGCGGTCATTCGGAACCATGGGGGTGATGTGGCTGCAGCTTTGCATGGGCAATATCCACATTTGTTATCCCCATTGTGTGCGGAAGCCAAAGCGTTGCTAGAAGGACTTCGCCTTGCCGAAGGTTGGAAATCATAG 2343 53.09 MAASALLLHLALCLCLLYSTRLYASPNPDLDALMAFKAASDKGNKLTTWNFTSDPCAWDGVSCLRNRVSRLVLENLELTGSIGPLTALTQLRVLSLKRNRLSGPIPDLSNFTALKLVFLSYNQFSGDFPASLLSLVRLYRLDLSHNNLTGEIPASVNRLTHLLTLRLEDNRFSGSILELNLPNLQEFNISANRLSGEIPKSLSTFPGSSFGQNVGLCGSPLQSCKSIVSNPTEPGSEGALASPITPPRNLTVSSSPTSLPGVTAETKPENTHHNSTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWRNSSDKARDGKGSKLLESEKIVYSSSPYPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHNSCKSLRLSHGNVKSTNVLLDQSGNARVSDFGLSLFTPPSTPRSNGYRAPECGEGRKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSASPDQRPKMSHVVKMIDELRGVEVSPFHDGSDSVTESPSVSEGTCGGGVSHVIHGRASDKCEWIHRYIKKFHRANFGALVTGGRDKSFYIGSMVANAMVINVDVACDESRRTFSFGAVIRNHGGDVAAALHGQYPHLLSPLCAEAKALLEGLRLAEGWKS 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4334786 4339890 - Maker00009929 Lcy7g0488 637320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0488 780 SUPERFAMILY Protein kinase-like (PK-like) 366 636 IPR011009 -
Lcy7g0488 780 Gene3D Ribonuclease Inhibitor 112 226 IPR032675 -
Lcy7g0488 780 ProSiteProfiles Protein kinase domain profile. 362 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0488 780 FunFam pollen receptor-like kinase 1 333 437 - -
Lcy7g0488 780 Gene3D Transferase(Phosphotransferase) domain 1 438 650 - -
Lcy7g0488 780 MobiDBLite consensus disorder prediction 232 275 - -
Lcy7g0488 780 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Lcy7g0488 780 Pfam Leucine Rich Repeat 138 158 IPR001611 GO:0005515(InterPro)
Lcy7g0488 780 Gene3D Ribonuclease Inhibitor 19 111 IPR032675 -
Lcy7g0488 780 CDD STKc_IRAK 368 639 - -
Lcy7g0488 780 FunFam Nuclear pore complex protein NUP107 27 178 - -
Lcy7g0488 780 PANTHER OS05G0588300 PROTEIN 9 642 IPR050994 -
Lcy7g0488 780 MobiDBLite consensus disorder prediction 246 275 - -
Lcy7g0488 780 Pfam Protein tyrosine and serine/threonine kinase 366 635 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g0488 780 Gene3D Phosphorylase Kinase; domain 1 337 437 - -
Lcy7g0488 780 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 438 646 - -
Lcy7g0488 780 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Lcy7g0488 780 Pfam Reverse transcriptase-like 721 776 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy7g0488 780 SUPERFAMILY L domain-like 43 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0069 Lcy-Chr5:797078 Lcy7g0488 Lcy-Chr7:4334786 1.04E-74 dispersed
Lcy5g0360 Lcy-Chr5:3623020 Lcy7g0488 Lcy-Chr7:4334786 3.39E-127 dispersed
Lcy6g0356 Lcy-Chr6:3295561 Lcy7g0488 Lcy-Chr7:4334786 6.47E-75 dispersed
Lcy7g0488 Lcy-Chr7:4334786 Lcy8g1684 Lcy-Chr8:43400948 2.22E-111 dispersed
Lcy7g0488 Lcy-Chr7:4334786 Lcy7g0496 Lcy-Chr7:4404296 2.26E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66071 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0488 - - - 0.0