Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0489 ATGGCTTCCAGAGAAGGGAGGCGTCGTCATCATCATCACCACAATCTCGTGCCTCTTGCTGCTTTGATCAGTAAAGAGGTGAGGAATGAGAGATTGGAGAAACCGACTGTAAGATATGGAAATGCAGCGCAGTCTAAGAAGGGGGAAGATTATTTTCTCATGAAGACTGATTGTCAGCGAGTTCCTGGGAACCCTTCATCTACTTTCTCTGTTTTTGCTATATTTGACGGACACAATGGAAATGCTGCAGCAATTTTCACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCTTTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCGGGAACTACAGCTACGTTTGTAATCATCGATGGATGGACAGTGACAGTAGCATCTGTTGGAGATTCTCGATGTATTTTAGATACTCAGGGTGGTGCGGTCTCTGCTTTAACAGTTGATCATAGACTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGTGGTGGGGAAATCGGAAGATTGAGCATTGTTGGCGGTGCTGAGATTGGCCCGCTCCGTTGTTGGCCTGGAGGCTTATGCCTTTCTCGATCAATTGGAGACATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTCGTGAAACAAGTAAAGTTATCAAATGCTGGTGGAAGGCTTATAATTGCTTCTGATGGCATCTGGGACGCCCTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCCGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTGAGAACAAGAGGCTTGAAAGATGATACAACCTGCATAGTTGTCGACATAATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCCTCCGAAGAAACAGAGCGTACTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTATCAGCTATCGGTCTCGTGGAAGAATTATTTGAAGACGGCTCCGCCATGCTGGCTGAAAGTAACTGTTGTCGCACTGCAATCCCGAGTAATTTCACTGGAGAGATAAGTGCCTCTATGAAGAACGAAGTCGCTTTCTGCCTTTCTCATGTTTGCATATTAACTTCTGTGTCTACAGCAATGTCCTCGAACCATCAGCTTGGATCTGTAGAGTTGAGTGGATCTGGACATGGCACACCCAGCCTATTCACATGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGCCCTTTCCTGTGTGCCGATTGTCGAAACAAGAAGGACGCAATGGAAGGGAAACGTCCCAGTGGAGTGAGAGTGGCGTAG 1434 47.0 MASREGRRRHHHHHNLVPLAALISKEVRNERLEKPTVRYGNAAQSKKGEDYFLMKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIFTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPPPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGLVEELFEDGSAMLAESNCCRTAIPSNFTGEISASMKNEVAFCLSHVCILTSVSTAMSSNHQLGSVELSGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4348030 4351986 - Maker00009943 Lcy7g0489 637321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0489 477 FunFam probable protein phosphatase 2C 5 38 305 - -
Lcy7g0489 477 SUPERFAMILY PP2C-like 44 300 IPR036457 -
Lcy7g0489 477 CDD PP2Cc 46 300 IPR001932 -
Lcy7g0489 477 Gene3D - 39 307 IPR036457 -
Lcy7g0489 477 SMART PP2C_4 34 298 IPR001932 -
Lcy7g0489 477 ProSiteProfiles PPM-type phosphatase domain profile. 31 300 IPR001932 -
Lcy7g0489 477 SMART PP2C_SIG_2 33 300 IPR001932 -
Lcy7g0489 477 Pfam Protein phosphatase 2C 64 285 IPR001932 -
Lcy7g0489 477 PANTHER PROTEIN PHOSPHATASE 38 299 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2319 Lcy-Chr2:48644550 Lcy7g0489 Lcy-Chr7:4348030 1.84E-199 dispersed
Lcy7g0489 Lcy-Chr7:4348030 Lcy9g2120 Lcy-Chr9:45855010 1.50E-155 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0489 - - - 0.0