Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0538 ATGAGAATCTCTCCGACTCCGCCTGCTTCTTCTTGCTCTTCGTCTTCCTCCTCCTGCGTCGGCTCCGATTTCGGCATTAATACTAAGAACAATCTCTTCGCTCCTCACCGGCCGCAATCGGACAAAACCAGAGCCAAGCGGCGGCGCCGGAATAATCAGGACGATTCGAAATGCGAGACTCACAATCGCGACAGCAATGGAATCAACATCATCAACAACAACAACAACAACAACAACAACAACGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCGCATCTATGGGACAAGAGTTCGTGGAATAGCATTCAGAACAAGAAAGGAAGGCAAGGAGCTTACGATAACGAGGAAGCCGCCGCCCGAACTTATGACCTCGCTGCCCTCAAATACTGGGGCCCCGGAACCACCCTCAATTTCCCGGTAGAGTCGTACACGAGTGAAATGGAAGAAATGCGGAAAGTAACGAAGGAGGAATATTTGGCGTCGTTGCGGCGGCGGAGCAGTGGGTTTTCGAGAGGCGTTTCCAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATCGGCCGCGTTTTCGGAAGCAAATATCTTTACTTGGGAACTTACAACACTCAAGAAGAAGCAGCTGCAGCTTATGACATGGCTGCAATTGAGTACAGAGGAGCCAATGCAGTGACAAACTTTGATATTAGCAATTACATTGGGAGGTTAGAGAACAAATCATCAGATTTTCAAGCAGCAGAGCAACCAGAGGAGCCCAATTACTCCCCTGCTTCGTCCGAGGGCGAAGTAGTACAACAACAGCAACAACAACAACAACAGCAAACGACATTCTCGGGCCCGATCGGCCTCCAGTTCTCGTCGATCGAGAACAACCCGACAATGGATGTCATGGAAGAACCTACACACGACGATCATGATCTCCATTGGTCTTTCTTAGACACAGGATTCGTGCAGGTCCCAGACCTCCCGCTCGAGAAATCGAGCGAACTGGCCGACCTCTACTTCGACGAGATCGGGTTCGAGGACGACATCGACTTGATATTCGAAGGGAGCTTGGAGAGCAAGAGCATTGATGATCAGGGTAATAATGAAGAAGATCATAATGTTGGGAAGATGGAGATGAACAATGAGAAAATGAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1269 50.43 MRISPTPPASSCSSSSSSCVGSDFGINTKNNLFAPHRPQSDKTRAKRRRRNNQDDSKCETHNRDSNGINIINNNNNNNNNNASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTSEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSDFQAAEQPEEPNYSPASSEGEVVQQQQQQQQQQTTFSGPIGLQFSSIENNPTMDVMEEPTHDDHDLHWSFLDTGFVQVPDLPLEKSSELADLYFDEIGFEDDIDLIFEGSLESKSIDDQGNNEEDHNVGKMEMNNEKMRLFSTTTSPSSSSITTSVSCEFRV 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4770610 4775350 + Maker00009896 Lcy7g0538 637370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0538 422 MobiDBLite consensus disorder prediction 63 84 - -
Lcy7g0538 422 MobiDBLite consensus disorder prediction 401 422 - -
Lcy7g0538 422 ProSiteProfiles AP2/ERF domain profile. 90 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 CDD AP2 89 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 Pfam AP2 domain 188 239 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 SUPERFAMILY DNA-binding domain 188 249 IPR016177 GO:0003677(InterPro)
Lcy7g0538 422 FunFam AP2-like ethylene-responsive transcription factor 89 155 - -
Lcy7g0538 422 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 PRINTS Ethylene responsive element binding protein signature 229 249 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 ProSiteProfiles AP2/ERF domain profile. 189 247 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 MobiDBLite consensus disorder prediction 47 62 - -
Lcy7g0538 422 CDD AP2 188 249 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 MobiDBLite consensus disorder prediction 27 84 - -
Lcy7g0538 422 SMART rav1_2 189 253 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 SMART rav1_2 90 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 FunFam AP2-like ethylene-responsive transcription factor 188 249 - -
Lcy7g0538 422 SUPERFAMILY DNA-binding domain 89 155 IPR016177 GO:0003677(InterPro)
Lcy7g0538 422 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lcy7g0538 422 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 55 303 - -
Lcy7g0538 422 Gene3D AP2/ERF domain 90 155 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 Gene3D AP2/ERF domain 188 249 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0538 422 MobiDBLite consensus disorder prediction 261 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0532 Lcy-Chr11:12585232 Lcy7g0538 Lcy-Chr7:4770610 3.14E-49 dispersed
Lcy13g2308 Lcy-Chr13:41963891 Lcy7g0538 Lcy-Chr7:4770610 1.02E-93 dispersed
Lcy3g1979 Lcy-Chr3:46921561 Lcy7g0538 Lcy-Chr7:4770610 2.12E-66 dispersed
Lcy7g0538 Lcy-Chr7:4770610 Lcy9g2006 Lcy-Chr9:44947296 2.71E-74 dispersed
Lcy7g0538 Lcy-Chr7:4770610 Lcy10g0392 Lcy-Chr10:8243982 5.18E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20396 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0538 - - - 0.0