Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0539 ATGAACTCAGTTCCCTTCATTTTCCTTCTCCTTCTCTCTCTCCTCCTCGCCGGAGCTTCCGATTCTCCTCCGCCCTCCGCCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCTCCATCCGATTCTCCCCCTCCGATCCCTACGGCTACGGAAAATTCTCCGTCAAGAGCTGCCTCAAACAGGCGATCAAAATGTCGAGCGTAATCGGTGACTATCTCGACCGAGGAGGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGAGCGACTGCAGAGAGCTTTCCGATTCGAATGTGGAGTTTCTCCGGTCGATTGAGGCCGTACTGGACGCGGCGGAGGACGTCGATGAGGATCTGGTGGAGCGAGTCGAGAGTATTTTGAGCGCGATCGTGACGAACGGCCAGACTTGCATCGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGCGCCGCTGTCGAGCGCCGGGAAGCTGTACAGTGTGTCGTTGGGATTGGTAACGAACTCGCTGTCGCGGCGGTGGAAGAAGCGGCGGCAGAAGGGAGGGAACTTTCCGGCAGCGGCGCGGAACAGAGAGCCACTGAACACGCTGATCAAGGGACTTCATAAAATGGGATCCTGCAACCAATCCACAATCTGCTCAGGAAGGAAGCGCTTGTTAACTGATTTAGGAAGCACAGGCATTTTCATAAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCCATTGCATTTGCTCCCAACAATTCAATGCCTGAAGATGGCTACTTTGTTATCTATGTTAGACAAGGATACTACCAAGAATACGTCGTCGTCCCCAAATACAAAACCAATATAATGCTCATCGGCGATGGCATTAACCGAACCGTCATCACCGGGAACCATAACGTCGTCGATGGTTGGACGACTTACAATTCTTCTACCTTCACTGTTTGTGGGGATGGATTTGTTGCAATAGATGTGACATTCAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTGGCCGTTCGCAACAGCGCGGACCTCTCGACGTTCTACCGCTGCAGTTTCGAGGGTTACCAAGACACGCTCTACGTCCATTCCCTAAGGCAATTCTACAGAGAATGTGACATCTATGGCACAGTAGATTTCATCTTCGGCAATGCAGCTGCAGTTTTCCAAAGATGCAATCTATACGCCAGAAAGCCACTCCCCAACCAAAAGAACGCCTTCACGGCGCAGGGCCGAACCGATCCGAACCAAAACACCGGCATCTCGATCCACAACTGCACGATCAAGGCAGCGACCGACTGGGAGATGGACGACCCGAACGCAGCGACGACGATGACAACGACGAACTTTCTCGGGCGGCCGTGGAAGGCGTACTCAAGGACAGTGTACATGCAGTCATACATTGGGGATTTGATCAGCCCTGTGGGGTGGTTGGAGTGGAATGGAACAGCAGGATTGGACACATTGTATTATGGAGAGTTTGAGAATTATGGACCAGGAGCCAACACAAGCATGAGAGTGAACTGGCCTGGCTATAGCTTGATGAATTCTACACAGGCTTTCAATTTCACTGTCTATAATTTTACAATGGGAGATACTTGGCTGCCTTACACTGATATTCCCTTCTCTGGAGGTTTGCTATGA 1695 51.86 MNSVPFIFLLLLSLLLAGASDSPPPSAALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKSCLKQAIKMSSVIGDYLDRGGDSRLNQREAGALSDCRELSDSNVEFLRSIEAVLDAAEDVDEDLVERVESILSAIVTNGQTCIDGLVESRSSLGNALSAPLSSAGKLYSVSLGLVTNSLSRRWKKRRQKGGNFPAAARNREPLNTLIKGLHKMGSCNQSTICSGRKRLLTDLGSTGIFINNTVVVSSTGADNFTSIGDAIAFAPNNSMPEDGYFVIYVRQGYYQEYVVVPKYKTNIMLIGDGINRTVITGNHNVVDGWTTYNSSTFTVCGDGFVAIDVTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQRCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCTIKAATDWEMDDPNAATTMTTTNFLGRPWKAYSRTVYMQSYIGDLISPVGWLEWNGTAGLDTLYYGEFENYGPGANTSMRVNWPGYSLMNSTQAFNFTVYNFTMGDTWLPYTDIPFSGGLL 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4780217 4787300 + Maker00010141 Lcy7g0539 637371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0539 564 CDD PMEI-like_3 28 179 - -
Lcy7g0539 564 SMART PMEI_2 21 176 IPR006501 GO:0004857(InterPro)
Lcy7g0539 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
Lcy7g0539 564 Gene3D - 239 563 IPR012334 -
Lcy7g0539 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Lcy7g0539 564 SUPERFAMILY Pectin lyase-like 240 562 IPR011050 -
Lcy7g0539 564 Pfam Pectinesterase 245 549 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy7g0539 564 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857(InterPro)
Lcy7g0539 564 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Lcy7g0539 564 PANTHER PECTINESTERASE 8 553 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy7g0539 564 FunFam Pectinesterase 239 563 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2382 Lcy-Chr6:48596680 Lcy7g0539 Lcy-Chr7:4780217 1.50E-131 dispersed
Lcy7g0539 Lcy-Chr7:4780217 Lcy9g1690 Lcy-Chr9:42119248 2.69E-161 dispersed
Lcy7g0539 Lcy-Chr7:4780217 Lcy3g1771 Lcy-Chr3:44975720 8.26E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0539 K01051 - csv:101206112 981.859