Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0563 ATGGGGGTCCCTGCAACTTTGGGCGACGATTTTCTGAGAGAACGAGCGGCGAAGATGAGAGAATCACTGCAAAAGAGCCAAACCATTACGGATAACGTCGTCTCGATTCTCGGCTCCTTTGACCACCGTCTTTCTGCTCTCGAAACCGCCATGCGTCCTACCCAGATCAGAACCAATTCTATTCGTAAAGCTCATGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGTTGGTCTTCTTGATACTTGGAGTTTAGTGCGCCTGGATGAGACCTTTTCCACTAGGGTTATGCAGGCTGACCACCCTTTATCCCATTTCCTTGTGGTTGTTGACGTCCTTAGCAAGGATGGGCCGTTTATTAATCTTAATAAAACCGTGTATGGTTTTGCGATTATCTTCAATTTTAAGATCAATAGGGATAAGGGTTCTGTGATTGGTACTAAAGAGTACTCTTCCTACTATCTACCTTGGTCTTCCCATGGGACAGTGAATCAAGTGACGTGTGCACAGGCAGAAACAAAAATACTTAAAGGGCCACATGAGGATTTGGAGAGTTATCTCGGGGCAATTGGTCAATTAAGAAACATTATTAAATTCTTTAGCAGCCATAAAAGTTTTAAGAGTAGTGAGGTAGTGCTTAACCAGGCAAATAATCTGCTTGCAAAAGCCATTTCAAAGCTAGAAGATGAGTTCAGACAACTGTTATCTTCCTACAGCAAACCTGTGGAGCCTGAGCGTCTTTTTGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCAACATGATGATTCAGGTGGAAAGAATCCTTCCTCAAATCATCATGCTGCACATCCTGATAATAATTTGGAGACTGCTGTCTACACACCTCCCACTCTAATACCACCACGTGTCCTACCACTGCTGCATGATTTATCACTGCAGATGGTTCAAGCTGGTCATCAACAGCAAATTTTAAAAATCTACAGGGACACCCGTTCAGTCGTTTTGGAAGAAAGCCTACGAAAATTAGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCGTGGGAGGTTTTAGAGGCAAAAATCGGGAACTGGATTCATTTTATGCGTATTGCAGTCAAACTGCTGTTTGCTGGAGAACGAAAAGTGTGTGATCAAATATTTGAAGGCTTTGAATCGCTTAGAGATCAATCCTTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGCTATTCAGTTTTGGGGAGGCAATTGCTAAAAGCAAGAGGTCGCCAGAGAAGTTGTTTGTACTTTTGGATATGTATGAAATAATGCGAGAGCTTCACTCAGAGGTATGTCTAATGCTTTTACAAGGCGTTAACCACCAAAACCATTTAGCTAGAGTCCTCTTTGGTGATTGCAAAATGAAGAGTTTTTGTGACTCAATAACTGGCTCCTTTCCTGTGAGCTCAGAACCTTCCCTTTTCACTTTACCTGCATCAGGACAATTGGCTTGGAAAGACTTGCTGTCAGTAATTGAGACGATTTTTAAGGGTAAAGCATGCAACGAGATCAGAGAATCTGCATCAGGTTTGACCAAACGGCTTGCTCAGACAGCCAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAAGATGCAACAAAAACTGCAGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTATGTCAAATTTCTTTTCGACTATCAAGCAACCTTGAAGCAGCTTTTCCAAGAATTTGAAGATAGTGGTCAAACAAGTTCGGAATTGGCCACTGTCACAATGCAAATAATGCAGGCTCTTCAATCTAATTTGGACGGGAAATCTATGCATTACAAAGATCCTTCTTTGACTCACTTATTCCTCATGAACAACATTCATTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGATTGTACAACAACATGCAAATCAGTATAAAAGGAAGGCTTGGGCAAAGATTCTGCAATGTCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCCGGTATAGATGGAGGAAACAGTAGCGGAGTTTCTAGGGCACTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCTGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGTTTCGGGCCACTAGTTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAACCAGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAGGGGAAGAACTTGAGTGAACCCAAGCGCTAG 2427 42.36 MGVPATLGDDFLRERAAKMRESLQKSQTITDNVVSILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQVGLLDTWSLVRLDETFSTRVMQADHPLSHFLVVVDVLSKDGPFINLNKTVYGFAIIFNFKINRDKGSVIGTKEYSSYYLPWSSHGTVNQVTCAQAETKILKGPHEDLESYLGAIGQLRNIIKFFSSHKSFKSSEVVLNQANNLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSESPGQHDDSGGKNPSSNHHAAHPDNNLETAVYTPPTLIPPRVLPLLHDLSLQMVQAGHQQQILKIYRDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEVCLMLLQGVNHQNHLARVLFGDCKMKSFCDSITGSFPVSSEPSLFTLPASGQLAWKDLLSVIETIFKGKACNEIRESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTSSELATVTMQIMQALQSNLDGKSMHYKDPSLTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRKAWAKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSRALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLVDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKR 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4949704 4959786 + Maker00009903 Lcy7g0563 637395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0563 808 Gene3D Exocyst complex component Exo70 176 808 - -
Lcy7g0563 808 SUPERFAMILY Cullin repeat-like 179 799 IPR016159 -
Lcy7g0563 808 MobiDBLite consensus disorder prediction 265 293 - -
Lcy7g0563 808 MobiDBLite consensus disorder prediction 263 301 - -
Lcy7g0563 808 Pfam Exo70 exocyst complex subunit C-terminal 375 456 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy7g0563 808 Pfam Exo70 exocyst complex subunit C-terminal 510 795 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy7g0563 808 Coils Coil 224 244 - -
Lcy7g0563 808 PANTHER EXOCYST COMPLEX PROTEIN EXO70 19 801 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy7g0563 808 Pfam Exocyst complex component Exo70 N-terminal 180 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1210 Lcy-Chr1:11440877 Lcy7g0563 Lcy-Chr7:4949704 2.60E-292 dispersed
Lcy7g0563 Lcy-Chr7:4949704 Lcy8g1841 Lcy-Chr8:44721348 1.72E-70 dispersed
Lcy7g0563 Lcy-Chr7:4949704 Lcy2g0063 Lcy-Chr2:462483 4.71E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0563 K07195 - csv:101206262 934.095