Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0566 ATGAGAATGAATTTATATTTAAACTTGATTTCAGAAATGAAAGGTGTAATCTCAATTTTTCCAAGTGGAAAAAAGAAACTCCACACGACAAGGTCGTGGGACTTCATGGGTTTCTCCGAAAAAGTCAACAGAGTCCGTACAGTGGAAAGCGACATCATTGTTGGAGTACTGGATACCGGCATTTGGCCAGAATCTCCAAGTTTCAATGACAAAGGTTACAGTCCGCCGCCAGCCAAGTGGAACGGCGTTTGTGAACTCTCCGCCAATTTCTCTTGCAACAATAAAATCATTGGAGCTCGATCATATCGCATCAACGGTCAACTTTCTCCAACTGATATCCCAGGTCCGAGAGACTCGGACGGCCACGGGACGCACACGGCATCGACGGTGGCCGGAGGATTGGTGAGGCAAGCTAACATGTTGGGTCTCGGCCTCGGCACGGCGAGGGGCGGAGTCCCATCGGCTCGTATTGCTGCTTACAAGGTATGCTGGTCGGACAGTTGCGACGACGCTGACATTCTCGCCGCATACGACGACGCCATCGCCGACGGAGTCGATATCCTCTCAGTCTCTATTGGGGGAGGAGAGGTGAGTGATTACTTCAACGACAGCATGGCCATTGGAGCTTTCCATGCAATGAGGAAGGGAATCCTCACGTCAATATCTGCCGGAAACGAGGGCCCGAACTTTTCAACTCTCACAAACTTCTCGCCGTGGTCGTTGACGGTGGCGGCCAGCACCACTGATCGGAAATTTGTCACGAAAGTTGAGCTCGGAGACGGACGAGGATTCGATAACTCGGTGGACATGGAGTTGGTGAAGGGCAAAATCGCTCTATGTGATTTGTATCAAGGTCCAACACAAATAGGGGCTGTAAGAGGTGCAGCTGGTATTATAATGAGAGATGATTCTGCACTAGACCACACTTTCTCTTATCCATTGCCTGCTTCTCACCTTCCTTCAAAAGATGGTGCTCTCATTTTCTCTTATATCACCTCAAATCGTAGCATTCCAACTGCAACTATATTGAAGAGCATTGAAGGAAAACATGAAAAAACTCCTTTTGTTGCAATTTTTTCTTCAAGGGGTCCAAACCCAATAACTCCCAACATTCTCAAGCCGGATTTGACTGGTCCTGGAGTTGAAATTCTTGCAGCGTGGTCTCCAATAGCTTCACCCTCAGGAGCTGAAGATGATACTAGAATGGTTCCTTACAACATCATTTCAGGAACTTCTATGTCTTGCCCACATGCCACAGCAGCAGCTGCATATGTTAAATCATTCCATCCTTCTTGGTCTCCTGCTGCCCTCAAATCAGCACTTATGACTACCGCATTTCCAATGAGCCTTGAAATTAACCCAAGCAGAGAATTTGCATATGGCTCTGGTCATATAAATCCACTAGGCGCAGTGAATCCTGGATTAATCTACAATGCTACCGAGATCGACTATATAAAGTTCCTATGTGGCCAAGGTTATAGCACTGAGATGCTCCGACAAGTCTCCGGGGATGATAGTACTTGTACTCCAGACAATTCCAACACAGTTTTTGACCTAAACTATCCTTCGTTTGCTCTTTCCACAAATATCTCAATACCCATCAGCCAAATTTACAAAAGGAATGTCACAAATGTTGGGTCAACAAGTTCCACATATGAAGCCACCATTCTTAATCTTCCACAGGATCTTAATATTACAGTAAAGCCTTCTATTCTTTCATTTAAGGCTTTGGGAGAGGAACAAAGCTTTGAGCTTAAAATTGAAGGGAAAATTAATTCTACTTTTGTATCAGCTTCCTTGTTGTGGGATGATGGTGAACACCAAGTGATAAGTCCTATAGTAGTGTTTGATGCTAATGCATTCACTAATTAG 1872 45.25 MRMNLYLNLISEMKGVISIFPSGKKKLHTTRSWDFMGFSEKVNRVRTVESDIIVGVLDTGIWPESPSFNDKGYSPPPAKWNGVCELSANFSCNNKIIGARSYRINGQLSPTDIPGPRDSDGHGTHTASTVAGGLVRQANMLGLGLGTARGGVPSARIAAYKVCWSDSCDDADILAAYDDAIADGVDILSVSIGGGEVSDYFNDSMAIGAFHAMRKGILTSISAGNEGPNFSTLTNFSPWSLTVAASTTDRKFVTKVELGDGRGFDNSVDMELVKGKIALCDLYQGPTQIGAVRGAAGIIMRDDSALDHTFSYPLPASHLPSKDGALIFSYITSNRSIPTATILKSIEGKHEKTPFVAIFSSRGPNPITPNILKPDLTGPGVEILAAWSPIASPSGAEDDTRMVPYNIISGTSMSCPHATAAAAYVKSFHPSWSPAALKSALMTTAFPMSLEINPSREFAYGSGHINPLGAVNPGLIYNATEIDYIKFLCGQGYSTEMLRQVSGDDSTCTPDNSNTVFDLNYPSFALSTNISIPISQIYKRNVTNVGSTSSTYEATILNLPQDLNITVKPSILSFKALGEEQSFELKIEGKINSTFVSASLLWDDGEHQVISPIVVFDANAFTN 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4986276 5002302 - Maker00009592 Lcy7g0566 637398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0566 623 CDD PA_subtilisin_like 265 342 - -
Lcy7g0566 623 Pfam Subtilase family 50 461 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy7g0566 623 ProSitePatterns Serine proteases, subtilase family, serine active site. 410 420 IPR023828 -
Lcy7g0566 623 PRINTS Subtilisin serine protease family (S8) signature 409 425 IPR015500 -
Lcy7g0566 623 PRINTS Subtilisin serine protease family (S8) signature 49 68 IPR015500 -
Lcy7g0566 623 PRINTS Subtilisin serine protease family (S8) signature 118 131 IPR015500 -
Lcy7g0566 623 Pfam Fibronectin type-III domain 518 615 IPR041469 -
Lcy7g0566 623 CDD Peptidases_S8_3 25 445 IPR034197 -
Lcy7g0566 623 SUPERFAMILY Subtilisin-like 27 475 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy7g0566 623 ProSiteProfiles Serine proteases, subtilase domain profile. 32 471 - -
Lcy7g0566 623 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 12 613 IPR045051 -
Lcy7g0566 623 FunFam Subtilisin-like protease SBT1.5 51 281 - -
Lcy7g0566 623 Gene3D - 488 617 - -
Lcy7g0566 623 Gene3D - 249 265 - -
Lcy7g0566 623 Gene3D - 266 349 - -
Lcy7g0566 623 Gene3D Peptidase S8/S53 domain 350 484 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy7g0566 623 Gene3D Peptidase S8/S53 domain 51 248 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0566 Lcy-Chr7:4986276 Lcy9g0404 Lcy-Chr9:11378610 8.65e-320 dispersed
Lcy7g0566 Lcy-Chr7:4986276 Lcy7g0567 Lcy-Chr7:5006190 2.25E-261 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0566 - - - 0.0