Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0605 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAGGGCAACGCTTCTAATGGCGGCAATGTTCAGAGATCCAAGAGCTTTGCGTTTCGAGCTCCTCAGGAGAATTTTACCATCCAGGATTTTGAATTGGGAAAGATATATGGCGTTGGCTCGTATTCGAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATGGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAATTGGATCATCCTGATATGGCATTGGAGTCCTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGACGAAGCTCGGTTTTATGCTGCAGAAGTGGTCGATGCTCTTGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAGAACTTGCTGCTTACTACTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGATAGTCGAATTACCGTGCTTCCAAATGCAGCGTCAGATGATAAAGCTTGTACATTTGTTGGCACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTTGGAAATGACCTTTGGGCGCTTGGGTGCACTGTGTACCAGATGCTTTCAGGGACTTCTCCTTTCAAGGATGCTAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCGCGAGATATAAAATTCCCCAGCTATTTTTCAGAGCAAGCCAGGGATCTCATCGACCACCTATTGGATTTAGATCCCGGCAAGAGACCAGGTGCTGGAGCTGAGGGTTATGCTTCTCTCAAGAGTCATCCCTTCTTTGAGGGGGTTGATTGGAAGAACATAAGAGCACAAACCCCTCCTAGGCTTGCTTTAGAAGCAGTGCCCCATTCAAATGAGAACGAGGATGGCTCCGAGTCCTCTTGGAATCCTTCACATATCGGAGATGGTGCACCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCCGAAGGATCACATCATATTACTCGGCTCGCATCGATAGACTCCTTCGATTCAAAATGGCAACAATTCCTTGAACCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAGAAACTTCAGAAACTAACAAGCAAAAAGGTTCAGCTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATCATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGATTAGTCCTTCACACTTCAAGATTTGCACATTCATTCTTCAGCCAAAAAAGATTGCCTCTTTCGAGGATGCAAAACAGCGAGCCTGGCAATGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1437 43.7 MLAMEKDFDAKLMIQGNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGMVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPDMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHNMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPGKRPGAGAEGYASLKSHPFFEGVDWKNIRAQTPPRLALEAVPHSNENEDGSESSWNPSHIGDGAPRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVISPSHFKICTFILQPKKIASFEDAKQRAWQWKKAIEGLQNR 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5456184 5462069 - Maker00009863 Lcy7g0605 637437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0605 478 Gene3D Transferase(Phosphotransferase) domain 1 113 308 - -
Lcy7g0605 478 ProSiteProfiles Protein kinase domain profile. 44 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0605 478 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 319 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lcy7g0605 478 Pfam Protein kinase domain 45 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0605 478 Gene3D - 343 478 IPR011993 -
Lcy7g0605 478 MobiDBLite consensus disorder prediction 318 357 - -
Lcy7g0605 478 FunFam 3-phosphoinositide-dependent protein kinase 2-like 113 311 - -
Lcy7g0605 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g0605 478 Pfam PH domain 371 477 IPR033931 -
Lcy7g0605 478 SUPERFAMILY Protein kinase-like (PK-like) 41 344 IPR011009 -
Lcy7g0605 478 Coils Coil 458 478 - -
Lcy7g0605 478 Gene3D Phosphorylase Kinase; domain 1 42 112 - -
Lcy7g0605 478 SMART serkin_6 44 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0605 478 CDD STKc_PDK1 42 296 IPR039046 GO:0004674(InterPro)
Lcy7g0605 478 FunFam 3-phosphoinositide-dependent protein kinase 1 344 478 - -
Lcy7g0605 478 MobiDBLite consensus disorder prediction 323 337 - -
Lcy7g0605 478 SUPERFAMILY PH domain-like 290 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0846 Lcy-Chr2:7639306 Lcy7g0605 Lcy-Chr7:5456184 5.12E-31 dispersed
Lcy7g0605 Lcy-Chr7:5456184 Lcy8g1859 Lcy-Chr8:44891114 3.00E-47 dispersed
Lcy7g0605 Lcy-Chr7:5456184 Lcy4g0413 Lcy-Chr4:5030181 6.99E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66076 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0605 K06276 - csv:101212874 892.108