Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0622 ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGGATCAATCTTTCTTGTCGCCTCGGCTTCCTTCAATCTGACATTGCCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGAGAGTCAATGCATCTGTATGGAGAAGACAAATGCTATCCTTCGAATCGAAGGATCAAGCTTTCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGCTGCGACCCAAATTGGGCGGCGAACCGGCAGAGACTCGCCGACTGCGGCATCGGCTTCGGCCGCGATGCCGTCGGCGGCAAAGGCGGCAAGATCTACATCGTAACCGACTCGTCCGATGCCGATCCGGCGAACCCAACTCCGGGCACCCTCCGCCACGCCGTGATCCAATTTGAGCCCCTTTGGATCATCTTCTCCGAGGATATGACCATTAGGCTCAAGCATGAACTCATCATCAATAGCTTCAAAACGATCGATGGGCGTGGCGCCAACGTCCACATCACCGGCGGCGGTTGCATCACTATTCAATACGTGTCCAACATCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGGTCGACCCCGACCCACGTGGGGCACCGGGGGCTCTCGGACGGGGACGGGATCTCGATATTCAGCTCTCGAAAGATCTGGATCGACCACTGCTCACTTTCATACTGCACAGACGGGCTGATAGACGCCATAATGGGGTCGACAGGGATAACAATATCGAACAGCTACTTCTCGCACCACGACGAGGTGATGCTGCTGGGGCACGACGACCGGTACGTGCAGGACTCGGGCATGCAGGTGACCATTGCCTTCAACCACTTCGGCGAGGCTCTGGTCCAGCGCATGCCCAGGTGCAGACATGGCTACATTCATGTCGTCAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGTGCTCGACCCACTATTAACAGCCAGGGCAATCGCTATACGGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCAGCGGAGACGGAGTGGGCGGCGTGGAATTGGCGGACGGACGGCGATATTTTGGTGAACGGCGCGTTTTTTGTGCCGTCCGGCGCCGGACTCAGCACCCAGTACGGTAAAGCCTCCAGCGTTGAGCCTAAGTCGGTGGCGCTTATCAATCAACTCACTATGAACGCCGGCGTCTTGGGCGCCCCCAGGTATAATCCTGGTGAAGGGATTGTATATCCAGGATTCAGTGGTAGTAACGGTGGATATGGTGGTAATACTGTCATCAATAATAGTCCGATTTATGGAAATGGTGGTGGTGGTAGTGACGATGATTTCTACGGAATGATATTTAAAGCTGGCAGCTATAGAGTATCACCATTTTCCTTGATAAACTTATGTATTCAAATTATGATAGTTTTGTATATAGTCACAAGTTATAGTGGTCTATTGACATTATTATAG 1497 52.51 MFPVLSILLIWMSGSIFLVASASFNLTLPHQHPDPDSVADELQRRVNASVWRRQMLSFESKDQAFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAVGGKGGKIYIVTDSSDADPANPTPGTLRHAVIQFEPLWIIFSEDMTIRLKHELIINSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAAWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNPGEGIVYPGFSGSNGGYGGNTVINNSPIYGNGGGGSDDDFYGMIFKAGSYRVSPFSLINLCIQIMIVLYIVTSYSGLLTLL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5671541 5678786 + Maker00009628 Lcy7g0622 637454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0622 498 SMART amb_all 145 342 IPR002022 -
Lcy7g0622 498 Pfam Pectate lyase 152 331 IPR002022 -
Lcy7g0622 498 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Lcy7g0622 498 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Lcy7g0622 498 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Lcy7g0622 498 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Lcy7g0622 498 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Lcy7g0622 498 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Lcy7g0622 498 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Lcy7g0622 498 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Lcy7g0622 498 Gene3D - 70 412 IPR012334 -
Lcy7g0622 498 PANTHER PECTATE LYASE 18-RELATED 17 413 IPR045032 GO:0030570(InterPro)
Lcy7g0622 498 FunFam Pectate lyase 70 412 - -
Lcy7g0622 498 SUPERFAMILY Pectin lyase-like 61 389 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1324 Lcy-Chr1:12771791 Lcy7g0622 Lcy-Chr7:5671541 2.65E-224 dispersed
Lcy1g1415 Lcy-Chr1:13707615 Lcy7g0622 Lcy-Chr7:5671541 3.58E-39 dispersed
Lcy5g2168 Lcy-Chr5:44640219 Lcy7g0622 Lcy-Chr7:5671541 1.32E-183 dispersed
Lcy7g0255 Lcy-Chr7:2216218 Lcy7g0622 Lcy-Chr7:5671541 1.07E-127 dispersed
Lcy10g1725 Lcy-Chr10:41619642 Lcy7g0622 Lcy-Chr7:5671541 4.10E-236 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0622 K01728 - csv:101205739 892.878