Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g0622 | ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGGATCAATCTTTCTTGTCGCCTCGGCTTCCTTCAATCTGACATTGCCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGAGAGTCAATGCATCTGTATGGAGAAGACAAATGCTATCCTTCGAATCGAAGGATCAAGCTTTCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGCTGCGACCCAAATTGGGCGGCGAACCGGCAGAGACTCGCCGACTGCGGCATCGGCTTCGGCCGCGATGCCGTCGGCGGCAAAGGCGGCAAGATCTACATCGTAACCGACTCGTCCGATGCCGATCCGGCGAACCCAACTCCGGGCACCCTCCGCCACGCCGTGATCCAATTTGAGCCCCTTTGGATCATCTTCTCCGAGGATATGACCATTAGGCTCAAGCATGAACTCATCATCAATAGCTTCAAAACGATCGATGGGCGTGGCGCCAACGTCCACATCACCGGCGGCGGTTGCATCACTATTCAATACGTGTCCAACATCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGGTCGACCCCGACCCACGTGGGGCACCGGGGGCTCTCGGACGGGGACGGGATCTCGATATTCAGCTCTCGAAAGATCTGGATCGACCACTGCTCACTTTCATACTGCACAGACGGGCTGATAGACGCCATAATGGGGTCGACAGGGATAACAATATCGAACAGCTACTTCTCGCACCACGACGAGGTGATGCTGCTGGGGCACGACGACCGGTACGTGCAGGACTCGGGCATGCAGGTGACCATTGCCTTCAACCACTTCGGCGAGGCTCTGGTCCAGCGCATGCCCAGGTGCAGACATGGCTACATTCATGTCGTCAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGTGCTCGACCCACTATTAACAGCCAGGGCAATCGCTATACGGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCAGCGGAGACGGAGTGGGCGGCGTGGAATTGGCGGACGGACGGCGATATTTTGGTGAACGGCGCGTTTTTTGTGCCGTCCGGCGCCGGACTCAGCACCCAGTACGGTAAAGCCTCCAGCGTTGAGCCTAAGTCGGTGGCGCTTATCAATCAACTCACTATGAACGCCGGCGTCTTGGGCGCCCCCAGGTATAATCCTGGTGAAGGGATTGTATATCCAGGATTCAGTGGTAGTAACGGTGGATATGGTGGTAATACTGTCATCAATAATAGTCCGATTTATGGAAATGGTGGTGGTGGTAGTGACGATGATTTCTACGGAATGATATTTAAAGCTGGCAGCTATAGAGTATCACCATTTTCCTTGATAAACTTATGTATTCAAATTATGATAGTTTTGTATATAGTCACAAGTTATAGTGGTCTATTGACATTATTATAG | 1497 | 52.51 | MFPVLSILLIWMSGSIFLVASASFNLTLPHQHPDPDSVADELQRRVNASVWRRQMLSFESKDQAFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAVGGKGGKIYIVTDSSDADPANPTPGTLRHAVIQFEPLWIIFSEDMTIRLKHELIINSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAAWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNPGEGIVYPGFSGSNGGYGGNTVINNSPIYGNGGGGSDDDFYGMIFKAGSYRVSPFSLINLCIQIMIVLYIVTSYSGLLTLL | 498 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5671541 | 5678786 | + | Maker00009628 | Lcy7g0622 | 637454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g0622 | 498 | SMART | amb_all | 145 | 342 | IPR002022 | - | |
Lcy7g0622 | 498 | Pfam | Pectate lyase | 152 | 331 | IPR002022 | - | |
Lcy7g0622 | 498 | PRINTS | Pollen allergen Amb family signature | 117 | 142 | IPR018082 | - | |
Lcy7g0622 | 498 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - | |
Lcy7g0622 | 498 | PRINTS | Pollen allergen Amb family signature | 297 | 316 | IPR018082 | - | |
Lcy7g0622 | 498 | PRINTS | Pollen allergen Amb family signature | 361 | 385 | IPR018082 | - | |
Lcy7g0622 | 498 | PRINTS | Pollen allergen Amb family signature | 390 | 413 | IPR018082 | - | |
Lcy7g0622 | 498 | PRINTS | Pollen allergen Amb family signature | 153 | 169 | IPR018082 | - | |
Lcy7g0622 | 498 | PRINTS | Pollen allergen Amb family signature | 93 | 110 | IPR018082 | - | |
Lcy7g0622 | 498 | PRINTS | Pollen allergen Amb family signature | 217 | 238 | IPR018082 | - | |
Lcy7g0622 | 498 | Gene3D | - | 70 | 412 | IPR012334 | - | |
Lcy7g0622 | 498 | PANTHER | PECTATE LYASE 18-RELATED | 17 | 413 | IPR045032 | GO:0030570(InterPro) | |
Lcy7g0622 | 498 | FunFam | Pectate lyase | 70 | 412 | - | - | |
Lcy7g0622 | 498 | SUPERFAMILY | Pectin lyase-like | 61 | 389 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1324 | Lcy-Chr1:12771791 | Lcy7g0622 | Lcy-Chr7:5671541 | 2.65E-224 | dispersed | |
Lcy1g1415 | Lcy-Chr1:13707615 | Lcy7g0622 | Lcy-Chr7:5671541 | 3.58E-39 | dispersed | |
Lcy5g2168 | Lcy-Chr5:44640219 | Lcy7g0622 | Lcy-Chr7:5671541 | 1.32E-183 | dispersed | |
Lcy7g0255 | Lcy-Chr7:2216218 | Lcy7g0622 | Lcy-Chr7:5671541 | 1.07E-127 | dispersed | |
Lcy10g1725 | Lcy-Chr10:41619642 | Lcy7g0622 | Lcy-Chr7:5671541 | 4.10E-236 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy7g0622 | K01728 | - | csv:101205739 | 892.878 |