Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0632 ATGGGTCCGTCGGAGAAGGACCTGAAAGACACGGTGGTGAGTCAACTGGCCGAGTCTGTGAAGGAGATTTCTCTTCTTCCTGAGTGTAACGGCATCTGTAAGAAGATGTATGGGGATTTGATTCGAAGGGTCAAGCTCTTAAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGAAGAACTTGGATTAGATGTTCTTAAGGGCTTGGAGTTGCTGAAAATTGCTCTGGATTCTGCTACAGAGCTTCTTAGGTCGGTCAGCCGTGGTAGCAAGCTATTTCAGGCTTCGCAGTTGGAGAAGATAGTACTTGAGTTTCATCATATGACAGAAGATATCGAAGCAGCATTGAGCAAGCTTCCCATTGACAAGCTCGGGATCTCGGATGAGGTTCGAGAACAGACTGAACTCGTTCATGCCCAATTCAAACGAGCGAAAGAGAGAGTAGGTTCAGTTGATGCACAGTTAGACAAGGATTTATCCATATTAGAGGAAGAGAAAGATCCTGACCCTGCAATATTGAAAAGACTTTCTGATAAGTTGCATCTTAGAACAATCAACGATCTGAAGAAAGAATCACTAGCAATACATGAGCTGGTGATCTCGAGCGATGGAGATCCAGAGAATATTTTTGGGAAAATGTCGTGCATTTTAAAGAAGCTGAAGGATTTTGTACAATTGGAAAACCCAGAAGTTGAAACTCCTCAAGATGAGAAGAGTACAACCATTAAACACAGATCTCCCGTCATCCCGGACGACTTCAGGTGCCCCATATCTCTTGAATTGATGAGGGATCCCGTGATCGTCTCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGACACAAAACCTGTCCCAAAACTCAGCAGGCTTTGCTACATACAGCCTTAACACCAAATTACGTTTTGAAGAGCCTGATTGCTCTGTGGTGTGAGAACAATGGCGTTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACATGAAACCTGGGAGCAGTATCTCAGACTGCGATCGGGCAGCCATCGATGCCTTACTGTTAAAACTGGTAAATGGATCTCCAGAACAGAAACGATCAGCTGCAGGTGAGTTCCGACTACTAGCGAAGAGGAATTCAGATAACAGAATTTGTATCGCCGAGGCAGGAGCCATTCCGTTCCTCGTCGAACTATTATCCTCAAATGATACCAGGACCCAGGAGCATGCAGTTACAGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACAATTGTCGATCTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGCATGGAGGCACGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATAGATGAGAACAAGGTCGCGATCGGAGCAGCCGGGGCAATTCCCGCTCTCATAAGTTTGCTTTGCGAAGGAACACCCAGAGGAAAGAAGGATGCTGCCACTGCTATCTTCAACCTTTCAATCTACCAGGGAAACAAAGCTAGGGCTGTGAGAGCAGGCATTGTGACTCCACTCATGGGATTTCTGAGAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGACGGCAATAGGGCAAGCCGAGCCGATGGCGGTTCTATTGGAGTTCATCAGAACCGGATCTCCACGGAACCGGGAAAACGCTGCTGCCGTGCTGTGGTCGCTTTGCAGTACTGATTTCAAGCAGTTGAAGCTAGCTAGGGAACATGGTGCAGAAGAGGCATTGAAAGAAGTGTCTGAAAATGGCACAGATAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGCTTTGATGGGCCATCTGCTAATCTATAA 1893 46.38 MGPSEKDLKDTVVSQLAESVKEISLLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEELGLDVLKGLELLKIALDSATELLRSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVGSVDAQLDKDLSILEEEKDPDPAILKRLSDKLHLRTINDLKKESLAIHELVISSDGDPENIFGKMSCILKKLKDFVQLENPEVETPQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALLHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNMKPGSSISDCDRAAIDALLLKLVNGSPEQKRSAAGEFRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVTPLMGFLRDAGGGMVDEALAILAILATHHEGKTAIGQAEPMAVLLEFIRTGSPRNRENAAAVLWSLCSTDFKQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5781207 5784741 - Maker00009962 Lcy7g0632 637464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0632 630 Pfam U-box domain 249 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g0632 630 FunFam RING-type E3 ubiquitin transferase 9 122 - -
Lcy7g0632 630 CDD RING-Ubox_PUB 250 302 IPR045210 -
Lcy7g0632 630 SMART arm_5 376 416 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 SMART arm_5 499 539 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 SMART arm_5 540 580 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 SMART arm_5 417 457 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 SMART arm_5 458 498 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 PANTHER U BOX DOMAIN-CONTAINING 34 622 - -
Lcy7g0632 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 322 IPR013083 -
Lcy7g0632 630 FunFam RING-type E3 ubiquitin transferase 249 322 - -
Lcy7g0632 630 SUPERFAMILY RING/U-box 246 323 - -
Lcy7g0632 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 SMART Ubox_2 252 315 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g0632 630 Gene3D - 524 627 IPR011989 -
Lcy7g0632 630 SUPERFAMILY ARM repeat 346 620 IPR016024 -
Lcy7g0632 630 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515(InterPro)
Lcy7g0632 630 Gene3D - 11 122 IPR036537 GO:0007166(InterPro)
Lcy7g0632 630 Gene3D - 342 424 IPR011989 -
Lcy7g0632 630 Gene3D - 425 523 IPR011989 -
Lcy7g0632 630 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g0632 630 FunFam RING-type E3 ubiquitin transferase 332 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1442 Lcy-Chr10:38092569 Lcy7g0632 Lcy-Chr7:5781207 9.64E-65 dispersed
Lcy11g0195 Lcy-Chr11:2283176 Lcy7g0632 Lcy-Chr7:5781207 1.13E-141 dispersed
Lcy1g0491 Lcy-Chr1:4317658 Lcy7g0632 Lcy-Chr7:5781207 1.41E-13 dispersed
Lcy3g1517 Lcy-Chr3:42051520 Lcy7g0632 Lcy-Chr7:5781207 1.98E-21 dispersed
Lcy7g0190 Lcy-Chr7:1662291 Lcy7g0632 Lcy-Chr7:5781207 3.38E-43 dispersed
Lcy7g0632 Lcy-Chr7:5781207 Lcy8g1307 Lcy-Chr8:39757307 4.28E-83 dispersed
Lcy7g0632 Lcy-Chr7:5781207 Lcy8g1815 Lcy-Chr8:44541024 6.87E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0632 K27628 - csv:101221065 1076.23