Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g0646 | ATGGCGCTCCACCACGGAAACGGCAACGACGACGGCGCCTCCGCCGCATTCAACATTTGCAACGGCAATGGCCACGGCCACTTTTATTCGGATCCGCTGAAGTGGGGGGCGGCGGCGGACGCGATGAAGGGCAGCCATTTGGATGAGGTGATGCGGATGGTGGAGGAGTACCGGAAGCCGGTGGTTCGGCTCGGTGGCGAGGGCTTGACGGTTGCTCAGGTCGCCGCCATTGCCGGCGGCGCCGGCGGGAATGTCGCGGTGGAGCTGGCAGAGGAGAGCCGGGCTCGGGTGAAGGCGAGTAGTGATTGGGTGATGGAGAGTATGAATCGAGGGACGGATAGTTATGGTGTTACGACCGGTTTTGGTGCAACTTCGCATCGAAGAACTAAAGAAGGAGGTGCCCTTCAAAGAGAACTTATCAGGTTTTTGAATGCCGGAATCTTCGGCAACGGCATCGAATCTTCTCATAAATTGCCACCGGCGGCGACCAGAGCCGCCATGTTGGTGAGAATCAACACCCTTTTACAGGGCTATTCGGGCATTAGATTTGAAATTTTGGAAGTCCTAGCGAAGTTTCTAAACCATGATATTACTCCATGTTTGCCTCTAAGGGGAACTATAACTGCATCTGGTGATTTGGTTCCTCTTTCTTACATTGCTGGGCTTTTGATTGGAAGGCCCAATTCCAAGGCTGTTGGGCCAAATGGGGAGTTCATTAACCCATCTGAGGCCTTTAAGTTAGCTGGAATTGAGGGTGGGTTTTTTGAGTTGCAGCCCAAGGAAGGTCTTGCTCTTGTGAATGGCACTGCTGTTGGGTCTGGCTTGGCTTCCATGGTGCTTTTTGAAGCCAACATTTTGGCTGTTCTTTCTGAAGTGTTGTCTGCTCTTTTTGCTGAGGTTATGCAAGGGAAGCCTGAATTTACAGATCACTTGACACATAAGTTGAAGCATCATCCTGGTCAGATTGAAGCTGCAGCTATAATGGAACATATATTGGATGGAAGTTCTTATGTGAAATCGGCTCAAAAGTTGCATGAGATTGATCCTTTGCAGAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCTCCACAATGGCTTGGACCACAAATTGAAGTCATTCGAGCTGCGACGAAGATGATTGAGAGGGAAATAAACTCAGTGAATGACAACCCTTTGATTGATGTTTCGAGAAACAAGGCCTTACATGGAGGAAATTTCCAAGGCACACCAATTGGTGTTTCCATGGATAACACTAGGTTGGCCATTGCTTCAATTGGCAAACTTATGTTTGCTCAATTCTCAGAGCTTGTCAATGATTTCTATAACAATGGGTTGCCTTCAAATCTTTCGGCAAGCCGCAATCCTAGCTTGGATTATGGCTTCAAAGGAGCCGAAATTGCTATGGCATCGTATTGTTCTGAACTTCAATTCTTAGCCAACCCTGTTACCAACCATGTCCAAAGTGCAGAGCAACATAACCAAGATGTGAATTCTTTGGGGTTGATTTCTTCAAGAAAAACAGAAGAAGCAGTTGAAATATTGAAGTTGATGTCCACTACTTTCTTGGTAGCCCTTTGCCAAGCTATTGACTTGAGGCACTTAGAAGAGAACTTGAAGAGCACAGTGAAAAACACGATTAGTCAAGTGGCCAAGAAAGTACTAATCATGGGGTATAATGGAGAGCTTCACCCAATCCGATTTAGTGAAAAACATTTGCTTCAAGTGGTTGATAGAGAGTATGTTTTCACTTACATTGATGACCCTTGCAGTGCAACCTATCCGCTAATGCAAAAGTTAAGGCAAGTTTTAGTCGAGCATGCTTTAAACAATGGTGAGAAAGAGGAAAACCTAACTACTTCCATTTTCCACAAGATAGGAGCATTCGAGGAAGAACTAAAGAACCTCTTGCCAAAAGAAGTAGAAAATGCAAGAGTCAAATTCGAGAGTGAAAATTCAACAATTCCAAACCAAATCAAAGAATGCAGGTCTTACCCATTATACAAGTTTGTTAGAGAAACTTTGGGGACAAGTTTACTGACAGGTGAGAAAGTCAAATCCCCTGGTGAAGAATTCGATAAGGTTTTCTCGGCCATTTGTGCTAGAAAGTTGATTGATCCAATATTGGAATGCTTGAAAGGATGGAACCGTACTCCCCTCCCTATCAACTAA | 2172 | 45.4 | MALHHGNGNDDGASAAFNICNGNGHGHFYSDPLKWGAAADAMKGSHLDEVMRMVEEYRKPVVRLGGEGLTVAQVAAIAGGAGGNVAVELAEESRARVKASSDWVMESMNRGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGIFGNGIESSHKLPPAATRAAMLVRINTLLQGYSGIRFEILEVLAKFLNHDITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPNGEFINPSEAFKLAGIEGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSALFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTTFLVALCQAIDLRHLEENLKSTVKNTISQVAKKVLIMGYNGELHPIRFSEKHLLQVVDREYVFTYIDDPCSATYPLMQKLRQVLVEHALNNGEKEENLTTSIFHKIGAFEEELKNLLPKEVENARVKFESENSTIPNQIKECRSYPLYKFVRETLGTSLLTGEKVKSPGEEFDKVFSAICARKLIDPILECLKGWNRTPLPIN | 723 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5895435 | 5900616 | - | Maker00009938 | Lcy7g0646 | 637478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g0646 | 723 | Gene3D | Fumarase/aspartase (Central domain) | 270 | 717 | - | - | |
| Lcy7g0646 | 723 | Gene3D | - | 536 | 657 | IPR023144 | - | |
| Lcy7g0646 | 723 | PANTHER | HISTIDINE AMMONIA-LYASE | 27 | 722 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
| Lcy7g0646 | 723 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 205 | 221 | IPR022313 | GO:0016841(InterPro) | |
| Lcy7g0646 | 723 | Pfam | Aromatic amino acid lyase | 69 | 548 | IPR001106 | - | |
| Lcy7g0646 | 723 | NCBIfam | phenylalanine ammonia-lyase | 31 | 713 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
| Lcy7g0646 | 723 | FunFam | Phenylalanine ammonia-lyase | 24 | 269 | - | - | |
| Lcy7g0646 | 723 | Gene3D | - | 23 | 269 | IPR024083 | - | |
| Lcy7g0646 | 723 | CDD | PAL-HAL | 88 | 533 | IPR001106 | - | |
| Lcy7g0646 | 723 | SUPERFAMILY | L-aspartase-like | 31 | 722 | IPR008948 | GO:0003824(InterPro) | |
| Lcy7g0646 | 723 | FunFam | Phenylalanine ammonia-lyase | 536 | 657 | - | - | |
| Lcy7g0646 | 723 | FunFam | Phenylalanine ammonia-lyase | 270 | 553 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g0292 | Lcy-Chr4:3572410 | Lcy7g0646 | Lcy-Chr7:5895435 | 0 | dispersed | |
| Lcy4g0293 | Lcy-Chr4:3579790 | Lcy7g0646 | Lcy-Chr7:5895435 | 0 | dispersed | |
| Lcy7g0646 | Lcy-Chr7:5895435 | Lcy13g1039 | Lcy-Chr13:22711472 | 0 | dispersed | |
| Lcy10g1753 | Lcy-Chr10:41917143 | Lcy7g0646 | Lcy-Chr7:5895435 | 3.72E-299 | wgd | |
| Lcy7g0646 | Lcy-Chr7:5895435 | Lcy8g1915 | Lcy-Chr8:45439277 | 2.44E-45 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy7g0646 | K10775 | - | rcu:8273543 | 1190.64 |