Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0654 ATGGCGAAAGACGATGTCACGGCGGCGCGGGGGTTCTCCGGCAAGGACTACCATGACCCTCCGCCTGCTCCGCTGTTCGACGCGGCGGAGCTCTGCAAGTGGTCCTTTTACAGAGCCGTCATTGCCGAGTTCACTGCCACTCTCCTTTTTCTCTACATCACCATCTTGACTGTGATCGGCTACAATAGCCAGACCGACCCCGACAAGCACGGCGCCGACGCTTGCGGCGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCAGGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCTTAGCCCGTAAGGTGTCGCTGGTCCGGGCAGTGGCGTACATGGTGGCTCAGTGTTTGGGAGCCATATGCGGAGTGGGGCTCGTGAAATCGTTCCAAAAGGCCTACTTCATCAAGTACGGCGGCGGTGCGAACCAGCTCGCCGACGGCTACAGCAAAGGCGTCGGCTTGGGCGCTGAAATCGTCGGTACCTTCATCTTGGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTTTTGGCTCCACTTCCAATTGGGTTCGCTGTGTTCATGGTTCACTTAGCCACCATCCCCATCACTGGCACGAGCATCAACCCAGCCAGAAGCTTCGGCCCTGCTGTTATCTTAAACAAGGAAAAGCCTTGGAATGACCACTGGATGTTCTGGGTTGGGCCTTTCGTCGGAGCCGCCATCGCAGCCTTCTACCACCAGTTCATTCTCAGGGCCGGCGCCGCCAAGGCTCTCAGCTCTTTCAGGAGCCACCCCTCCGTTTGA 864 58.91 MAKDDVTAARGFSGKDYHDPPPAPLFDAAELCKWSFYRAVIAEFTATLLFLYITILTVIGYNSQTDPDKHGADACGGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGVGLVKSFQKAYFIKYGGGANQLADGYSKGVGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNKEKPWNDHWMFWVGPFVGAAIAAFYHQFILRAGAAKALSSFRSHPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6003407 6008694 + Maker00009739 Lcy7g0654 637486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0654 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0654 287 CDD MIP 38 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0654 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 282 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lcy7g0654 287 NCBIfam MIP family channel protein 42 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0654 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Lcy7g0654 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0654 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0654 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0654 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0654 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0654 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0654 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lcy7g0654 287 SUPERFAMILY Aquaporin-like 30 272 IPR023271 -
Lcy7g0654 287 FunFam Probable aquaporin PIP1-2 23 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1375 Lcy-Chr1:13308805 Lcy7g0654 Lcy-Chr7:6003407 1.10E-164 dispersed
Lcy1g1376 Lcy-Chr1:13333268 Lcy7g0654 Lcy-Chr7:6003407 6.94E-168 dispersed
Lcy1g1378 Lcy-Chr1:13350074 Lcy7g0654 Lcy-Chr7:6003407 5.90E-93 dispersed
Lcy5g2326 Lcy-Chr5:46134097 Lcy7g0654 Lcy-Chr7:6003407 9.38E-33 dispersed
Lcy7g0654 Lcy-Chr7:6003407 Lcy8g1261 Lcy-Chr8:39184051 3.18E-137 dispersed
Lcy10g1764 Lcy-Chr10:42030570 Lcy7g0654 Lcy-Chr7:6003407 7.20E-168 wgd
Lcy7g0654 Lcy-Chr7:6003407 Lcy8g1900 Lcy-Chr8:45259851 1.75E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0654 K09872 - csv:101204956 541.576