Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0691 GGTCATATTCTTTTTGGAGTCTCCTCCCCTTCTGTTCCATGTTGGCTTGCCTGTACTTTCATTCTTCTTAAAGAAAGCGATTCTTTTAGCAAGTACCTGAGGCTAATGAGAAGGAATTTGACAGATAGGGAGGTGGAAGGTTGGCTTGCTCTCTTGGATATCCTAGGAAAGAAATTCTTGCAGGGAGAGGGACTTGTTGAAAGGGAATCCTTGTTTCTTGGAAGAGTTTCTTATCCTAGAAAAGGCATTCTATTGATAAAAATGTCATCTGCAAATCCATATTTTGATGACATTCGGACCAAACCCGAGGTTATTGATCCTCCTCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGAACCTGCTCGAAATGGAGGAAAACCTAATGCAGCTGTCTCTAGCAGCGTCCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGGAGAGGGCCTGGGTGAAGTTGGTGGTGTCAACTGTCAATGATGGAGTTGGTGGTAATGTTAGTTATAGCAAAGGTTTTGGTGGTGGAATACCACTTCTTTATGCCATATATGACAATAATTTGTTATCTTATATCCTTATGTCAATAAACCTTCTATCGTTGCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGGTGTCCCACCTGCAGGCATGAACTTGGCAATATTAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCATACTATAGCAAGCTGAAACACGAATCTCAATGTGCCTATCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACGGTTATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCATCGATATGTTAAGTCAAATCCACAAGAGGTCGAAAATGCTACCTGGATGTTAACGGTACTATTCTGCTTCGTCTTATCTTTTCATGTTTGGGTTATTGGCCTGTCGAATCTTCTTCAACATATAGTTTTCAGTTGCTTCGGTCAGTACTTTTGTTTACACTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCATTCTTGCGGTTTATGGGTGATGACAATGAGGCGAAGAACTACAGTTATAGTCTTGAGGTTGGTGGGAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAACATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 1413 43.67 GHILFGVSSPSVPCWLACTFILLKESDSFSKYLRLMRRNLTDREVEGWLALLDILGKKFLQGEGLVERESLFLGRVSYPRKGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSEPARNGGKPNAAVSSSVRELLECPVCLNAMYPPIHQERAWVKLVVSTVNDGVGGNVSYSKGFGGGIPLLYAIYDNNLLSYILMSINLLSLQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVLFCFVLSFHVWVIGLSNLLQHIVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6398544 6402470 + Maker00009791 Lcy7g0691 637523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0691 470 FunFam E3 ubiquitin-protein ligase SINAT3 249 307 - -
Lcy7g0691 470 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 118 465 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lcy7g0691 470 FunFam E3 ubiquitin-protein ligase SINAT5-like 358 463 - -
Lcy7g0691 470 MobiDBLite consensus disorder prediction 106 132 - -
Lcy7g0691 470 Pfam Sina, TRAF-like domain 366 463 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lcy7g0691 470 Pfam Sina, zinc finger 248 323 - -
Lcy7g0691 470 SUPERFAMILY TRAF domain-like 252 346 - -
Lcy7g0691 470 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 358 463 IPR008974 GO:0005515(InterPro)
Lcy7g0691 470 ProSiteProfiles Zinc finger SIAH-type profile. 252 312 IPR013010 GO:0008270(InterPro)
Lcy7g0691 470 SUPERFAMILY TRAF domain-like 341 467 - -
Lcy7g0691 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 307 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1027 Lcy-Chr10:32393723 Lcy7g0691 Lcy-Chr7:6398544 8.22E-206 dispersed
Lcy6g0068 Lcy-Chr6:613316 Lcy7g0691 Lcy-Chr7:6398544 1.21E-155 dispersed
Lcy6g0069 Lcy-Chr6:617257 Lcy7g0691 Lcy-Chr7:6398544 9.85E-155 dispersed
Lcy7g0691 Lcy-Chr7:6398544 Lcy8g2151 Lcy-Chr8:47645821 6.29E-137 dispersed
Lcy7g0691 Lcy-Chr7:6398544 Lcy1g2128 Lcy-Chr1:29369174 1.59E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0691 K04506 - csv:101205198 491.115