Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0692 ATGTCTATGAAGTTACACCATATTGATCTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTGAAGGATCTCACATCTCAGTCTGCCAATAAATTCTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTGAGTTTTGGGGCATTTATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTCGGAGTCCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAATAAAAAGTATGAACTTTGCATCGGGGATGGCAATAAAAAACCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATTAGGAAAAAATATGAGCTGCTGCAATTCTCAAGTCTTGATGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATGCATCATTCTCGAATAGCACTTCTACTGATATTGAAGTAAACCAAGAAAAGAGGAATTATGAAAAGGTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAATAGCTGGGGAAGAAAAGATTCTGAGCCTAAGAACTGCAAGAAGGGAAATCCATTGGTATTAAGCAGCTCAATGGCTGGTATGGTTGAATTTGTTGGTTTAATTAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGTCGAGTGATCCGTATGTAATTCTCTCGTTGGGTAATCAATCAGTGAAGACACGTGTTATAAAGAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCAATTCCAGATTTCATTCCTCCATTAAGGGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGATTTCATGGGCGAAGCAGAAATCGACATCCATCCGCTGCTCACCGCGGCCCGAGCCTGTGAGAGGTCCACAATCAGTGAACCAATGCAGCTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCACTCTTGAAGATGGGAAGATCCGACAAGAAATCTCCTTGAAGCTGCAGAACGTCGAGAGAGGCGTGCTGGAGATGGAGCTCGAATGCGTTCCTCTTTCTCAGTAG 1119 42.63 MSMKLHHIDLKGGSGTQKRLKDLTSQSANKFCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYELCIGDGNKKPKPDSSIEERFDFIRKKYELLQFSSLDDQFFCPFPPPQKRNASFSNSTSTDIEVNQEKRNYEKVPTKTRIGSAFRNSWGRKDSEPKNCKKGNPLVLSSSMAGMVEFVGLIKVNVVRGTNLAVRDVVSSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFIPPLRVLVYDKDTFSTDDFMGEAEIDIHPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIITLEDGKIRQEISLKLQNVERGVLEMELECVPLSQ 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6404255 6410416 + Maker00009921 Lcy7g0692 637524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0692 372 SMART C2_3c 217 312 IPR000008 -
Lcy7g0692 372 Gene3D Arf GTPase activating protein 6 138 IPR038508 -
Lcy7g0692 372 FunFam stromal membrane-associated protein 1 isoform X1 6 137 - -
Lcy7g0692 372 Gene3D C2 domain 215 370 IPR035892 -
Lcy7g0692 372 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 214 372 - -
Lcy7g0692 372 SUPERFAMILY ArfGap/RecO-like zinc finger 17 131 IPR037278 -
Lcy7g0692 372 ProSiteProfiles C2 domain profile. 198 314 IPR000008 -
Lcy7g0692 372 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096(InterPro)
Lcy7g0692 372 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096(InterPro)
Lcy7g0692 372 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096(InterPro)
Lcy7g0692 372 SMART arf_gap_3 17 138 IPR001164 GO:0005096(InterPro)
Lcy7g0692 372 CDD C2_ArfGAP 215 359 - -
Lcy7g0692 372 CDD ArfGap 20 126 - -
Lcy7g0692 372 Pfam Putative GTPase activating protein for Arf 18 131 IPR001164 GO:0005096(InterPro)
Lcy7g0692 372 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096(InterPro)
Lcy7g0692 372 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 372 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Lcy7g0692 372 Pfam C2 domain 217 304 IPR000008 -
Lcy7g0692 372 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 213 309 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1030 Lcy-Chr10:32422889 Lcy7g0692 Lcy-Chr7:6404255 5.47E-177 dispersed
Lcy5g1665 Lcy-Chr5:38858268 Lcy7g0692 Lcy-Chr7:6404255 2.37E-73 dispersed
Lcy7g0692 Lcy-Chr7:6404255 Lcy7g1196 Lcy-Chr7:14166702 6.86E-30 dispersed
Lcy7g0692 Lcy-Chr7:6404255 Lcy1g0121 Lcy-Chr1:1033618 4.95E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0692 K12486 - csv:101221541 677.552