Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0710 ATGCCGGGTTTCGCTTCAGAGATATCCATTTGTAACCAACTTATTATAGAGAACCTCAAAGTATATGTCATGACTGATGTCAGTCCAAGGACCGACATCTCTACAGATGTCGACACAGATGACAAAAACCAGAGGCTTGAAATGGTGCAGCGTAATGCTGCTGTGGCTTCTGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGTGAAGCTGCCAGAAAAAGCCGATTACGGAAAAAAGCATATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAATTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTAAGAGCAGCAGTAAACTCTCATGCAAGTGATACTGAACTTCGAATGGTTGTCGATGGCATCTTGCTTCATTATGATGAGGTTTTTCGGCTAAAAGGCGTCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTTCGTTCATCAGAGCTCCTAAAGCTTCTTGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGATGGGCATATCAAACTTGCAGCAGTCCTCACAGCAAACTGAAGATGCATTGTCGCAAGGCATGGAGGCCTTGCAACAATCGTTGGCCGAGACGTTGTCCAGTGGATCTCTTGGCTCCTCGAATACGTCTGGCAACGTGGCAAACTACATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACTCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTGCAACAAATGCTTCGAATATTGACAACTCGTCAGTCAGCTCGTGCACTTCTTGCAATCCATGATTACTTCTCCAGACTACGAGCCCTCAGTTCCCTGTGGCTTGCTCGCCCAAAAGAGTGA 1068 46.44 MPGFASEISICNQLIIENLKVYVMTDVSPRTDISTDVDTDDKNQRLEMVQRNAAVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMVVDGILLHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMLRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6731665 6738972 + Maker00010025 Lcy7g0710 637542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0710 355 Pfam bZIP transcription factor 70 110 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0710 355 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 73 88 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0710 355 PANTHER TRANSCRIPTION FACTOR TGA9 43 355 - -
Lcy7g0710 355 Pfam Seed dormancy control 152 227 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy7g0710 355 Coils Coil 89 116 - -
Lcy7g0710 355 FunFam BZIP family transcription factor 69 118 - -
Lcy7g0710 355 SUPERFAMILY Leucine zipper domain 70 113 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0710 355 SMART brlzneu 66 129 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0710 355 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 68 112 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0710 355 Gene3D - 69 121 - -
Lcy7g0710 355 ProSiteProfiles DOG1 domain profile. 135 352 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy7g0710 355 Coils Coil 146 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1614 Lcy-Chr13:35099510 Lcy7g0710 Lcy-Chr7:6731665 3.16E-170 dispersed
Lcy5g1196 Lcy-Chr5:27254294 Lcy7g0710 Lcy-Chr7:6731665 4.13E-107 dispersed
Lcy6g0977 Lcy-Chr6:10271897 Lcy7g0710 Lcy-Chr7:6731665 5.10E-92 dispersed
Lcy7g0710 Lcy-Chr7:6731665 Lcy8g1992 Lcy-Chr8:46218478 5.48E-104 dispersed
Lcy7g0710 Lcy-Chr7:6731665 Lcy5g0911 Lcy-Chr5:15586818 6.97E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20410 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0710 K14431 - csv:101216885 583.178