Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0715 ATGGATCAATTTCCCAAAGAACTCGACAAAGAATTCTGCAACACCGAGAAAATTGAAAGAGAAGAAGAAGAAGACGACGAGGACGACGAGCAAGAAGATGGACAAGACGACTGGGACGATTGGAATGCAGACGAGGAAGAAGGCGAAGAAGCATTTGACTCGAATTTTCTGTGTCTGTTCTGCAACTCCAAGTATAGTGACTGCGACACGCTGTTCAGACATTGCAACTCGGTCCACTACTTCGATTTTCATGACATTAGGAGGGCTCTGGGTTTAGACTTTTATGGTTCGTTTAAAATCATCAACTACATACGATCTCAGGTAGCAGAAAATAGGTGTTGGAGCTGTGGTCTCTTGTATCAATCAAACCAGGATTTACAGAACCATTTACACAAAACATTCAATCTTAGTGACATCAAGGCTCTTTGGGATGATGATAAATATCTAAAACCCTTCAGGCAAGATGATCCCCTCCTGTACAGTTTTGCAGAAGACGAAGAGGATGATGACATTTCACTCATGAACAATACGGATACTGATGGAGGTAATTGCAATGTTGATGAAATGACTGGAGAAAGTCTTCCATTTCATCCAAACCGACACAAAGAAAATGGAATGGAAGATTGTAGTTCTACTTCACACAGTTTTTCAAATGCTCCAAGAAACTTAGAGGCCGTGATTGAGAATACCGTGAAAACCACGGAGGCTTTGGGATTGAATGATAAGATGCAAGAAGATGATCAATTAAAAATAGGCAGACGAAATTTTTATTCAAAGGATATCAAGAATGCAAATGAAAACTACTTTGGTTCATATAGCTCTTTTGGCATACACAGAGAGATGTTAAGTGACAAGGTCAGAATGGAAGCTTATATGCAAACTATTTTGCAAAACCCCTCTCTCTTCCACAATGCAGCTGTGATGGATGTAGGTTGTGGAACAGGCATACTTAGTCTCTTTGCTGCAAAAGCGGGTGCGTCAAGAGTTATTGCAGTTGAAGCAAGTGAAAAGATGGCAGCAGTGGCCACCCAAATTGCAAAAGACAATGGCCTTGGGCGGAATAGGAAACAGACTGGAGACTGCAGCATGTCAAGTGGGACTATAGAAGTGGTTCATGGTATGGTAGAAGAACTTGATAAGAACATAGAGATTCAGCCTCACAGTGTTGACGTATTATTGAGTGAATGGATGGGCTACTGCTTGCTGTATGAGTCAATGCTCAGCTCAGTTCTCTTTGCAAGGGATCGTTGGTTGAAGCCTGGAGGTGCAATCTTACCAGATACTGCCACAATTCTTGTTGCAGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTATGGTTTCAGCATGTCTTGTGTAGGGAAGGAACTTGTAGAGGATGCTGCCAAAGGTCCCATCGTTGACATTGTGGATGCTAAAGATCTAGTAACTAGTGCTGCAATTCTTCATACTTTTGATCTAGCAACTATGCATCCTGACGAAGTAGACTTCACTGCAAGTACTGAGTTGGAACCAAATTTACATTCTCCTTCTAGCAACTCAGAGAATGTTGAAGTTGAAACCTCTTGGTGTCATGGAGTTGTCCTATGGTTTGAAACTGGTTTTACAAGCAGATTTTGCAAAGAATCATCGGCTGTTCTGTCTACATCCCCGTACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCAGAGAACCAATTGCTATAACATCTAGAAAATCTGCCAGCAACAAATCAGCACCAGTAGGCAGCGATGCCTCCCCTGCTGTCAAAGTTCATTTGCGCCTTAGCATCGTCCGTGCGCCCGAACATCGAAGCATTGACATTTCACTGGAGACTACTGGGATTGCTGGTGATGGTAGGAAGCGCCACTGGCCTGTACAACTTTTCACACTAAGGTAG 1920 42.55 MDQFPKELDKEFCNTEKIEREEEEDDEDDEQEDGQDDWDDWNADEEEGEEAFDSNFLCLFCNSKYSDCDTLFRHCNSVHYFDFHDIRRALGLDFYGSFKIINYIRSQVAENRCWSCGLLYQSNQDLQNHLHKTFNLSDIKALWDDDKYLKPFRQDDPLLYSFAEDEEDDDISLMNNTDTDGGNCNVDEMTGESLPFHPNRHKENGMEDCSSTSHSFSNAPRNLEAVIENTVKTTEALGLNDKMQEDDQLKIGRRNFYSKDIKNANENYFGSYSSFGIHREMLSDKVRMEAYMQTILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAKDNGLGRNRKQTGDCSMSSGTIEVVHGMVEELDKNIEIQPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFSMSCVGKELVEDAAKGPIVDIVDAKDLVTSAAILHTFDLATMHPDEVDFTASTELEPNLHSPSSNSENVEVETSWCHGVVLWFETGFTSRFCKESSAVLSTSPYTPKTHWSQTILTFREPIAITSRKSASNKSAPVGSDASPAVKVHLRLSIVRAPEHRSIDISLETTGIAGDGRKRHWPVQLFTLR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6788189 6792491 + Maker00009657 Lcy7g0715 637547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0715 639 MobiDBLite consensus disorder prediction 18 41 - -
Lcy7g0715 639 CDD AdoMet_MTases 307 425 - -
Lcy7g0715 639 Pfam C2H2 type zinc-finger (2 copies) 58 132 IPR041661 -
Lcy7g0715 639 Pfam Methyltransferase domain 307 422 IPR041698 -
Lcy7g0715 639 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 271 577 IPR029063 -
Lcy7g0715 639 ProSitePatterns Zinc finger C2H2 type domain signature. 58 79 IPR013087 -
Lcy7g0715 639 MobiDBLite consensus disorder prediction 1 41 - -
Lcy7g0715 639 SUPERFAMILY beta-beta-alpha zinc fingers 33 170 IPR036236 -
Lcy7g0715 639 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 265 593 IPR025799 GO:0016274(InterPro)|GO:0018216(InterPro)
Lcy7g0715 639 FunFam Protein arginine N-methyltransferase 6 261 426 - -
Lcy7g0715 639 Pfam Arginine methyltransferase oligomerization subdomain 428 579 - -
Lcy7g0715 639 MobiDBLite consensus disorder prediction 1 17 - -
Lcy7g0715 639 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 242 620 IPR025799 GO:0005634(PANTHER)|GO:0016274(InterPro)|GO:0018216(InterPro)
Lcy7g0715 639 Gene3D - 429 630 - -
Lcy7g0715 639 Gene3D Vaccinia Virus protein VP39 256 426 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0762 Lcy-Chr2:6744605 Lcy7g0715 Lcy-Chr7:6788189 5.31E-33 dispersed
Lcy2g0897 Lcy-Chr2:8239400 Lcy7g0715 Lcy-Chr7:6788189 1.94E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0715 K11436 - csv:101215999 982.63