Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0716 CCACCCCATAATCCAAGGACTAAGCAGGACAACGCAGCACCAACACGAAGGCTTGATCGGGAAGCGTACGCCGGAGGAGAGCGAGCCGAAGGGATTGGGCCTTCTCGGCCCACTCGTGTGGGCCGAGTGCTTTCCACCTCCGTTCGGTCCCTGTTGCCCCGGTCCGCCCCAATTCCACTCGATTCAGTCCTAAATCGCCTTCGAACGCCAAGTGGCCTACACCACACCGGTGTGCAGTGGTTCTATATGGTATTGCCTGTCACGTGTTCCCCGTCTACAACAAATTCACTACTGGTGTCACGTGAAGGGCATGTGAGTGGCTTGGCCAGATTTTGGCATCAACAAAAGTCTGGAAAATTCCTTCTGAAGTCTGAAGGTCTGAGCCGAGAGAGACGGGTTGACAGCTTGGTTCAAAACGAAGCCCAAATTCCAATCGTCACCTCGGTCACTGAAAACGACGCCGCATCAAAGGGAGAAAAGGCCAAGCCCATGGGCCCCCACTGTCACACGGGTGGGTCGTCTCGTGCCCACGATGTTGACCCAGATAGATATTTTACCTGTGGGCTCCACGGACAAAGCCGGCCATTGGAAGGGTTTCTTTGCTGGATCTACAGGGCTGTGTTCATGGAAATCGCGGAGGGAATGAAGCCATCAGCTACAAACAATTGCCATACTGATGGCGGAACAGACACTGTTGAAGTTCAATTCTCAGAATTGTGTCAGCCTGAAGAAGCCGAACGTTTTTGGTCTGCATTTGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCACATCAGGGAGCTGAGAACAATAGCTTCACTTTATGCCACATATTGAGAATTTGCAAGCTGAATATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTGAGTAGTCTCTATGGTGCAGATTGGGAGAATAGATTAGAGGCAAAGGAGCTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAATCAGCTATATCCTGCCCTACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCGTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTCTGGTTTCCATTTTGGCTATTTTAATTCTTCATGTTCCCGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTTTGTTAAGAAAGGCGGAAAGGGAGTGGACCTGCTTGGATCACTTTGTAATGTCTATGACACATCAGAGGAAGAACTGAGGGAAGTAATGGAAAAGGCAAATAGTTTGATAGAAGACATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAATAGCAAAAGCTTGGAGAATATCGACACTGAGGGTTTGATATACTTTGAAGACTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAGCGGGTATTTGTTAATGATGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACGATGAGTGGCATCAAGAGGAAGTTTGACTCAATGTGCTCACCTGCTAGAACAATAACAAGTCCAATGTCTCCACTTCGCTCTCCTACTTCACATGCCAATGGCACTCTTAATAGTGGCAATGCAAAACTTGCTGCTACACCTGTTAGCACAGCCATGACGACAGCAAAGTGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAAACCTTCAGTAGAGATGGAGCGATTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTTGGAGAGCGCTGTATAGCAGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCATAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCGACACATAAAACTGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGGCTCTTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCTTGATTGTTGCTAAACCTGCTCTTGCTGCTGAAATAAATCGTTTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTTTCTGGTATCGGGGTATCAACCATGCCTACTTTGCAAAAGCATGAGAGTTTGCCAGGTCAGAACGGGGAGATAAGGTCACCAAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTCCTGGCTTTCAGTAATATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCAAATCCTGGAGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATATTTTTCAGCAAGATCATCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGCTGCAATTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGGCATCACTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGGAAGCAACCACAATGTAAACCACAAGTCTTCCGCAACGTGTTTGTTGATTGGTCTTCGACACGTCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCTTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAACTGACAGGGTTCCTCAAGTCAACAACAATAGTGATGGTATACCTGATCAAGTTTATTTAACTGTAATGGTGATGTCCTATTTGCAGTTTATTATCTTGCATATCATTTCTAAACATGCTTTTCGGCCTTCTTTTGTCTTATTATTAGCACCATGTCCTGGATCACCCAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCATTTCAAAGCCCTTCAAAAGACCTTACCGCCATAAACAACCGCTTGAATGGATTTGGACTTGCAATTGTGCGGCCCTTGTTTTTGCTAAGCCGAGTCAGTCGTGAAAATTCAGACAGCGTGGACAATAGC 3627 43.73 PPHNPRTKQDNAAPTRRLDREAYAGGERAEGIGPSRPTRVGRVLSTSVRSLLPRSAPIPLDSVLNRLRTPSGLHHTGVQWFYMVLPVTCSPSTTNSLLVSREGHVSGLARFWHQQKSGKFLLKSEGLSRERRVDSLVQNEAQIPIVTSVTENDAASKGEKAKPMGPHCHTGGSSRAHDVDPDRYFTCGLHGQSRPLEGFLCWIYRAVFMEIAEGMKPSATNNCHTDGGTDTVEVQFSELCQPEEAERFWSAFVLYSVKRLRDKNSESSHQGAENNSFTLCHILRICKLNIVEFFKELPQFVVKAGPVLSSLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLLGSLCNVYDTSEEELREVMEKANSLIEDILKKKPRLASECNSKSLENIDTEGLIYFEDLMEESSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSMCSPARTITSPMSPLRSPTSHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMPTLQKHESLPGQNGEIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIIKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSTRRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNNSDGIPDQVYLTVMVMSYLQFIILHIISKHAFRPSFVLLLAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGFGLAIVRPLFLLSRVSRENSDSVDNS 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6794084 6803931 - Maker00009804 Lcy7g0716 637548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0716 1209 MobiDBLite consensus disorder prediction 150 175 - -
Lcy7g0716 1209 SMART DUF3452_2 260 409 IPR024599 -
Lcy7g0716 1209 MobiDBLite consensus disorder prediction 1 38 - -
Lcy7g0716 1209 Pfam Retinoblastoma-associated protein A domain 591 792 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Lcy7g0716 1209 Pfam Domain of unknown function (DUF3452) 271 409 IPR024599 -
Lcy7g0716 1209 MobiDBLite consensus disorder prediction 10 26 - -
Lcy7g0716 1209 Pfam Retinoblastoma-associated protein B domain 916 1043 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Lcy7g0716 1209 Coils Coil 443 467 - -
Lcy7g0716 1209 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 237 1183 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Lcy7g0716 1209 Coils Coil 504 524 - -
Lcy7g0716 1209 FunFam Retinoblastoma-related protein 1 370 528 - -
Lcy7g0716 1209 Gene3D - 879 1067 - -
Lcy7g0716 1209 CDD CYCLIN_AtRBR_like 916 1047 - -
Lcy7g0716 1209 FunFam Retinoblastoma-related protein 1 594 782 - -
Lcy7g0716 1209 SUPERFAMILY Cyclin-like 599 794 IPR036915 -
Lcy7g0716 1209 SUPERFAMILY Cyclin-like 914 1053 IPR036915 -
Lcy7g0716 1209 FunFam Retinoblastoma-related protein 1 866 1075 - -
Lcy7g0716 1209 Gene3D - 594 782 - -
Lcy7g0716 1209 Gene3D - 370 528 - -
Lcy7g0716 1209 SMART RB_A_2 591 792 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Lcy7g0716 1209 MobiDBLite consensus disorder prediction 563 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0716 Lcy-Chr7:6794084 Lcy8g0735 Lcy-Chr8:27064303 7.05E-10 dispersed
Lcy7g0716 Lcy-Chr7:6794084 Lcy10g0990 Lcy-Chr10:31810923 3.88E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20411 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0716 K04681 - csv:101219810 1717.21