Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0738 ATGCAAAATCATATTCCCCTTGAAGTGGAGTTAGACGTGACCGAAGCGAATGAAGACTTGTCAGAAGGGAAATCGATCATCGATGCAATCTCTAATCTCGTTGCTCGTCTGCAAGATTTCTTGCAATTTTCTGCTGTTGTTTCTTCGTTTTTCATATTTTTTAATCCATTTGAATGTCTCGAATCTGACGCCATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCCCGAATTAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGAGCAAAGACAATGAATTCATTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATATGGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGCAGCACTGGTAGAGGAAGAGGGCGAGGACGAGGAAGGGGTCGAGGACGGCCTGCTCGAACAGCCGAAAGGGACCACTTCCAACCCAACCCCGATGTCGACCCTTGCACATCTATAGAAAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACATCAAAAGAAGTAGGTGAAGCCAATCAAGCCGTCCAAAACTTCGATCTCAATGCCGACGTCAATACCAGCGAAGAATCCAAGACTGTAGCAGCAGCAGTACCAGACGTGCCCGTCGAACCGGCCGCGCCAACTACTACCGAGTCCGAGGCTAAAGCTGCTGATGAATTCCCTGCCTGGCCTCTTTCTGACGTGGACAAAATGGCAATTGACCCTCTCCAATATGCTCATCTCAGCACAAGAGTAGATGAAGAAGAGGAAGATTACGATGAAGAGGAGTAA 1038 46.63 MQNHIPLEVELDVTEANEDLSEGKSIIDAISNLVARLQDFLQFSAVVSSFFIFFNPFECLESDAMRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDMDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDHFQPNPDVDPCTSIENRNKNPNPDVHMEHHVEPSETSKEVGEANQAVQNFDLNADVNTSEESKTVAAAVPDVPVEPAAPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEE 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7103088 7109233 - Maker00009709 Lcy7g0738 637570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0738 345 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 67 237 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Lcy7g0738 345 SUPERFAMILY Histone-fold 68 153 IPR009072 GO:0046982(InterPro)
Lcy7g0738 345 MobiDBLite consensus disorder prediction 208 222 - -
Lcy7g0738 345 MobiDBLite consensus disorder prediction 154 196 - -
Lcy7g0738 345 FunFam dr1-associated corepressor homolog 65 150 - -
Lcy7g0738 345 MobiDBLite consensus disorder prediction 154 246 - -
Lcy7g0738 345 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 72 135 IPR003958 -
Lcy7g0738 345 Gene3D Histone, subunit A 59 150 IPR009072 GO:0046982(InterPro)
Lcy7g0738 345 MobiDBLite consensus disorder prediction 288 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0738 K21752 - - csv:101209714 461.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0738 Lcy-Chr7:7103088 Lcy8g2031 Lcy-Chr8:46561147 6.33E-57 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0055 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.2e-88 323.6
Lcy2g2047 . 201 369 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.1e-52 204.1
Lcy4g0296 . 79 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.4e-52 203.8
Lcy2g2047 . 120 379 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.2 2.0e-54 209.9
Lcy4g0296 . 19 177 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 7.2e-49 191.4
Lcy2g0055 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Lcy2g2047 . 120 369 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.6 5.9e-61 231.5
Lcy4g0296 . 25 221 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.9e-52 202.6
Lcy2g0055 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Lcy2g0055 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.0e-38 155.2
Lcy2g0055 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.0e-80 297.4
Lcy2g2047 . 201 369 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.6e-49 193.7
Lcy4g0296 . 79 230 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.7e-49 193.0
Lcy4g0296 . 43 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.8e-64 243.0
Lcy2g2047 . 173 337 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 6.6e-51 198.0
Lcy2g0055 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Lcy7g0738 . 65 344 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.5 8.8e-60 228.0
Lcy13g1687 . 58 190 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.8 1.2e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20412 None None None None Lcy TF