Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g0780 | ATGTCTCGGAAATCTCAGGCGATGATTTCACTGCAATCTACTAAATCCATGCCAGTTAATTCTCGGTTCATGATTCCGCAAGCTGCTGAAGCTTTGGAAGAGCCTTATGATCGGAATGTGAAAAACATGGAAGATAGTTCGTTAGTTAATGGTGAAAATGGTGCTTCTGGAGATGATGCCGTCAATCGACTTCAATGCAGTATGAACAATATTGACGAGCTGAATGAGGACTCGCCATATAATTGCAATATTACAACAGTGGAAGAAAGACCGACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAGTGTCGCCTTCGCATAGTGAAAGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTTCAAATGGGAATTGGGATCTTGTAAAGATACTGTCATCTGCAGGAACAGAGTCAGTAGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTGATTCCTGCAAATCCAGATATCCTTGATGGCGTTGATGATCTTATGCAACTCAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAATGATTACATTGAAGGATACAAGCGCAAAACAGTCAATAGCCCGCATGTTTATGCTATTACAGATACAGCCATAAGAGAGATGATTCGAGGGCACTTGGCTCGAAAGAAAAATAGAATTTTTAGAGGGGTGGAGTCGGAGAAATCCACGAATGAGCTGTGGGAGATGCTTAGCGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCTGCCCTTGGCGGTGGAAGTGGAATAGAATATGAGATATTAAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGCCGCTTTGGAAAATTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCTGATGGTAAATCTGACTTTGATTGTGCTGCTCTTGATGAACCCCGGACAGTTTTGCTTGAAAAGTCTAGAGTTGTTCAATGCACGGAGGGAGAAAGGTCATACCACATCTTTTATCAACTCTGTAGTGGGGCTCCTCCTGCACTTAAAGAGAGACTAAACTTGAGAAGAGCGGAAGAGTACAAATATCTCAGCCAGAGCAATTGTTTTTCAATAAGTAGAGTAAATGATGCTGATGATTTTCGTGTAGTCATGGAAGCACTAGATGTTGTCCATATCAGCAAAGAAGATCAGCACAGTGTATTTGCAATGCTTGCTGCTGTGCTGTGGCTGGGAAATGTTTCATTTAGTGTGATAGACAATGAGAATCATGTGGAGGCTGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAGTGTGAGATCGAGGAGCTTAAACTAGCTTTATCAACCCGAAAAATGAGAGTTGGGAATGACAGCATTATCCAAAAGCTTACTTTATCTCAGGCAAGAAACTCCAAATTGCAAGTAGAACTCTCTACTGTTAAACTCCTAATTGCTATTGATACTAGAGATGCTTTGGCAAAGTCAATATACGCTTGTTTGTTTGAGTGGCTGGTCGAACAAATTAACAAATCTCTTGCTGTAGGCAAACGACGCACTGGCAGATCTATCAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGAAATAGTTTTGAACAGTTCTGTATTAACTATGCAAATGAGAGACTACAGCAGCATTTCAATCGTCACTTATTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATTGACTGGGCAAAAGTTGATTTTGACGACAACCAAGATTGTCTCAGTCTGTTTGAAAAGAAACCTTTGGGATTATTGTCCCTGCTAGATGAGGAGTCTACTTTCCCAAATGGTTCAGATCTGACATTTGCGAACAAGCTTAAGCAGCATTTGCGTTCTAATTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTCACTGTCTGTCATTATGCAGGAGAGGTCACTTACGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCTATTCAACTCCTATCCTCATGCTCATGCCATCTCCCTCGGATTTTTGCATCCAATATGCTAAATCAATCAGAGAAGTCCATAGGTGGCACTTTACATAAATCTGGTGGTGCAGAATCCCAAAAACTAAGTGTTGCAAGAAAGTTTAAGGGTCAATTATTCCAATTGATGCTTCGTCTTGAAAATACAACACCTCATTTCATCCGTTGCATCAAGCCCAACAACCTTCAGTCTCCCAGATTGTATGAGCAAGGACTTGTATTACAGCAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCTACCAGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTACAAGAAAGCATTGCATCGCAGGATCCACTAAGTGTCTCAGTTGCAATTCTTCATCAATTTGATATAGTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTGCTGGAAGATACAAGAAACCGCACCCTCCATGGGATTCTTTGTGTTCAAAGCTGTTACAGAGGGCACCTTGCTCGACGCCACCTCAAAGAGCTGAAGAGAGGGATTTCCGTACTTCAGTCATGTATTAGCCTCCCTTTTGCACGTGGGGAGCAAACCAGAAAAGAATATGCAATCTTGATACGAAGGCATAGGGCCGCTATTTCTATTCAGAAGTGTGTGAAAGCCAGAATTGCTAGAAAACGTTTGGAGAAAGTCTGTGATGCATCACTTGTGATACAATCAGTTATCCGTGGCTGGTTGGTCAGGAGATGCTCGGGAGATATAGGATTAATGACATCTGGTGGCCTGACGGCAAATGGGTCGGGTGAGGTGCTTGTTAAGTCATCATTCCTTGCAGAATTACAACGCCGTGTCCTGAGGGCAGAGGCTGCTTTGAGAGATAAAGAAGAGGAAAACGACATCCTCCATCAGCGTCTTCAACAGTACGAGAACCGTTGGTCAGAGTATGAACTGAAAATGAAGTCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTCTCCATTGCGAAGAAAAGCTTAGCCGTTGATGATTCAGAGAGAAACTCTGATGCATCAGTCAACGCAAGTGATGACAGAGGATACAGTTGGGAAGTGGGTAGTAACAACACAGCTAATGAAAGCAATGGAGTCAGACCAATGAATGCAGGTCTCAGCGTCATTAGCCGGTTGGCTGAAGAATTCGAACAAAGAAGTCAAGTCTTCGGCGACGATGCGAAGTTCTTGGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTCTCGACCCAGATAGGGAACTCAGAAGGTTGAAACAGATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGCGAAACGAAAGTGATTTTGAATAAGCTTGGGAATGAAGGTGCCATGGATAAGGTGAAAAAGAAGTGGTGGGGAAGGAGGAACAGCACAAGGTATAGTTAA | 3678 | 41.87 | MSRKSQAMISLQSTKSMPVNSRFMIPQAAEALEEPYDRNVKNMEDSSLVNGENGASGDDAVNRLQCSMNNIDELNEDSPYNCNITTVEERPTMDDGEDGFMPLPSPSVSPSHSESRWGDTSSYTPRKILQSWFKLSNGNWDLVKILSSAGTESVVSLTDGKVLKVKAENLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIEGYKRKTVNSPHVYAITDTAIREMIRGHLARKKNRIFRGVESEKSTNELWEMLSGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISDGKSDFDCAALDEPRTVLLEKSRVVQCTEGERSYHIFYQLCSGAPPALKERLNLRRAEEYKYLSQSNCFSISRVNDADDFRVVMEALDVVHISKEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEAVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDSIIQKLTLSQARNSKLQVELSTVKLLIAIDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGSDLTFANKLKQHLRSNSSFRGERGKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPRIFASNMLNQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNLQSPRLYEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESIASQDPLSVSVAILHQFDIVPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILCVQSCYRGHLARRHLKELKRGISVLQSCISLPFARGEQTRKEYAILIRRHRAAISIQKCVKARIARKRLEKVCDASLVIQSVIRGWLVRRCSGDIGLMTSGGLTANGSGEVLVKSSFLAELQRRVLRAEAALRDKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTANESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILNKLGNEGAMDKVKKKWWGRRNSTRYS | 1225 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7488959 | 7503706 | - | Maker00009932 | Lcy7g0780 | 637612 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g0780 | 1225 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 446 | 571 | - | - | |
| Lcy7g0780 | 1225 | ProSiteProfiles | Myosin motor domain profile. | 179 | 896 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy7g0780 | 1225 | Pfam | Myosin head (motor domain) | 181 | 884 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy7g0780 | 1225 | Gene3D | - | 594 | 786 | - | - | |
| Lcy7g0780 | 1225 | SMART | MYSc_2a | 173 | 897 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy7g0780 | 1225 | Gene3D | - | 830 | 897 | - | - | |
| Lcy7g0780 | 1225 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 126 | 175 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy7g0780 | 1225 | MobiDBLite | consensus disorder prediction | 1109 | 1125 | - | - | |
| Lcy7g0780 | 1225 | PRINTS | Myosin heavy chain signature | 635 | 663 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy7g0780 | 1225 | PRINTS | Myosin heavy chain signature | 323 | 350 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy7g0780 | 1225 | PRINTS | Myosin heavy chain signature | 209 | 228 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy7g0780 | 1225 | PRINTS | Myosin heavy chain signature | 582 | 610 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy7g0780 | 1225 | ProSiteProfiles | IQ motif profile. | 900 | 926 | - | - | |
| Lcy7g0780 | 1225 | Pfam | IQ calmodulin-binding motif | 902 | 919 | IPR000048 | GO:0005515(InterPro) | |
| Lcy7g0780 | 1225 | Pfam | IQ calmodulin-binding motif | 978 | 993 | IPR000048 | GO:0005515(InterPro) | |
| Lcy7g0780 | 1225 | ProSiteProfiles | IQ motif profile. | 952 | 979 | - | - | |
| Lcy7g0780 | 1225 | Gene3D | Kinesin motor domain | 178 | 829 | IPR036961 | - | |
| Lcy7g0780 | 1225 | ProSiteProfiles | IQ motif profile. | 250 | 276 | - | - | |
| Lcy7g0780 | 1225 | Gene3D | - | 954 | 995 | - | - | |
| Lcy7g0780 | 1225 | Gene3D | - | 900 | 953 | - | - | |
| Lcy7g0780 | 1225 | FunFam | Myosin heavy chain | 389 | 445 | - | - | |
| Lcy7g0780 | 1225 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 152 | 948 | IPR027417 | - | |
| Lcy7g0780 | 1225 | Gene3D | - | 389 | 445 | - | - | |
| Lcy7g0780 | 1225 | SMART | iq_5 | 920 | 947 | IPR000048 | GO:0005515(InterPro) | |
| Lcy7g0780 | 1225 | SMART | iq_5 | 897 | 919 | IPR000048 | GO:0005515(InterPro) | |
| Lcy7g0780 | 1225 | SMART | iq_5 | 974 | 996 | IPR000048 | GO:0005515(InterPro) | |
| Lcy7g0780 | 1225 | SMART | iq_5 | 951 | 973 | IPR000048 | GO:0005515(InterPro) | |
| Lcy7g0780 | 1225 | CDD | MYSc_Myo8 | 193 | 884 | IPR036022 | - | |
| Lcy7g0780 | 1225 | PANTHER | MYOSIN | 132 | 1215 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lcy7g0780 | 1225 | Coils | Coil | 1021 | 1069 | - | - | |
| Lcy7g0780 | 1225 | MobiDBLite | consensus disorder prediction | 1094 | 1125 | - | - | |
| Lcy7g0780 | 1225 | FunFam | Unconventional myosin-XIX | 594 | 786 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g0248 | Lcy-Chr3:7827042 | Lcy7g0780 | Lcy-Chr7:7488959 | 1.57E-24 | dispersed | |
| Lcy4g2008 | Lcy-Chr4:46557902 | Lcy7g0780 | Lcy-Chr7:7488959 | 9.79E-131 | dispersed | |
| Lcy7g0780 | Lcy-Chr7:7488959 | Lcy9g1262 | Lcy-Chr9:37239621 | 6.57e-313 | dispersed | |
| Lcy7g0780 | Lcy-Chr7:7488959 | Lcy3g1285 | Lcy-Chr3:38810644 | 5.02E-28 | transposed |
Pathway information