Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0798 ATGCGGAATCTCTCAAAACGAACGTCCGTTGGAGCAGAGTATCAAAAAGTAAAGCATCCGAGAATGGAAGAAAATATGCGAAATCGAACTTCTGAATATTCGAATGCCAAATGCTGGTGTCAGATCAGTGCCTTTCTGAAATTGAAAGAATCGAGGGCTCATTTTATCACCGAAGAGACGGCGAACGATTCAAGTTGTTTTGCAGAAAAGGGCCTGCAAAATCTCGCGGCAATCTGTGCTCAAGTTTCTACGTATAGCCATCAAGAAACTCAATGTGTTCTCATTGAAAGATTAATGGTGTCTGCTTTGATCACTGGGATGGTATCTGAAACTTTGATGAAGATTGTATCACCCTGCTGGAAACCTTCTGTTGAAGGCGAAAATTCTAGTAGGGGTGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCTGGGCGCCATATCAATGGAGAATTCTCAATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGCAGCCAACTTGAGTCAGGGCCACTGAGCTCATATGAATCGGGTCCCGTTGGAACGTTTGTTGGAATCTATGATGGCCATGGAGGTCCTGAAGCTGCAGAATTCATAAATGATCGTCTGTTCAATAATATGAAGAAATTTATTCCAGAAAATCAGGGAGTATCAGCTGAAATGATTAACAAAGCATTCTTGGAGACAGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTATTAAGCCGCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCTATCCAATTGTCATCTGAGCACAATGCAAGTATTGAATCTGTGAGAGAGGAGTTGCACTCGTTGCATCCCAATGATCCACAGATCGTGGTGTTAAAGCACAAGGTGTGGCGCGTGAAGGGTGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCGAGAGCCTCTTTTGCCGAAGTTCAGATTACCAGAACCATTCCACAAGCCAATACTAAAAGCCGAGCCTGCTATCGTAGTGCAGAAATTGTACCCAGAGGATCAATTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGACATCGTCCATAGTTGTCCACGTAATGGGATTGCAAGGAAACTTGTTAAAGCTGCTCTTCATGAAGCTGCAAAAAAAAGAGAAATGAGATACACAGACTTGAAGAAGATCGACCGCGGGGTAAGAAGACATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTTGATTCGCATCTGATTAGTCGCAGTCCGAGCCACGGACCGATGCTTTCAATCAGAGGAGGTGCTGGTATCCTCGCTAGATCATAG 1473 42.84 MRNLSKRTSVGAEYQKVKHPRMEENMRNRTSEYSNAKCWCQISAFLKLKESRAHFITEETANDSSCFAEKGLQNLAAICAQVSTYSHQETQCVLIERLMVSALITGMVSETLMKIVSPCWKPSVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSYESGPVGTFVGIYDGHGGPEAAEFINDRLFNNMKKFIPENQGVSAEMINKAFLETEEEFLSLVKKQWLIKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGIARKLVKAALHEAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSHGPMLSIRGGAGILARS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7713865 7718575 + Maker00009643 Lcy7g0798 637630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0798 490 ProSitePatterns PPM-type phosphatase domain signature. 189 197 IPR000222 GO:0043169(InterPro)
Lcy7g0798 490 Pfam Protein phosphatase 2C 188 432 IPR001932 -
Lcy7g0798 490 CDD PP2Cc 156 463 IPR001932 -
Lcy7g0798 490 PANTHER PROTEIN PHOSPHATASE 148 462 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy7g0798 490 SUPERFAMILY PP2C-like 165 464 IPR036457 -
Lcy7g0798 490 FunFam Phosphatase 2C family protein 144 473 - -
Lcy7g0798 490 SMART PP2C_4 147 461 IPR001932 -
Lcy7g0798 490 Gene3D - 145 472 IPR036457 -
Lcy7g0798 490 ProSiteProfiles PPM-type phosphatase domain profile. 155 463 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2327 Lcy-Chr6:48069976 Lcy7g0798 Lcy-Chr7:7713865 4.00E-174 dispersed
Lcy7g0798 Lcy-Chr7:7713865 Lcy8g1268 Lcy-Chr8:39272682 1.04E-180 dispersed
Lcy5g0243 Lcy-Chr5:2326871 Lcy7g0798 Lcy-Chr7:7713865 5.33E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0798 K01102 - csv:101220760 738.413