Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0808 ATGTTGGATCTCAACGAAACGACGACGAATCGGGTTGTAATGGAAGATTCCGAGACTTCGAATTCCTCCGTCGTGAATGCCGACGAGGTCTGCAACAGCAGAGACGAAGACTCCTCTGTTTTAATCTTCGATATTCTCAAAAGGGAAAATTCCGGCGGCGGCGGCGCGTCGACGGAGCTGGTGACTCAGTCGCTTTTTCCGGTGGCCGGAGGGTGGGGGGAAACTGGCTCTCCGGTGCCGAGGACCCATTGGTTGAACCTGTCGTCCACGGCGGATTCCGGCGGCGGAGGACCAGCGGAGCTGAGAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTTACTTTTTACCGGCGGACTGGAAGATGGGAATCTCATATATGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTCGACACAGCTCATGCTGCGGCAAGGGCCTATGATCGAGCGGCGATAAAGTTTCGAGGAGTGGATGCAGATATAAACTTCGACATAAGTGATTACGATGAAGATATGAAACAAATGAAGAATCTGAGCAAAGAAGAGTTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTCTCTCGTGGAGGATCGAAGTTGAGAGGATTGTCTCTTCAAAAATATGGAAGATGGGAAACTCAAATGAGCCAAATCATCGGAAAAAGTGGAATTGAGCAAAGGCCTTATAAAGGGGAGACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTAAGTAATTCTTCCCAAAAGCTCAACATTGAAAGACCAAAGAATGAAAATAATGTTTGTGCATATGGTGTGGCTGGACAACAACCTCATATTCCTCCATCTGTGTGGTCTGGTCTTTACTCTGGTTTTTTTGCAGATAATGAGGAAAGAGGGAGAGAGAAGAGAAACAACGACTCCACAAAGATCTCTACGAGCTGGGGATGGCAAATGCCAACGTCAATGTCGATGGCAATGTCAATTCAAGGAAATGCAAGTAATAATGGAATAAGAGCAAGAGATCAAGAATTGGCTCATGTTTCCAAGAGTGCAGCATCATCAGGATTCTCTTCCTCTTCCAATTTTGGTTCAATTTATGGCCAAAACAACACTGCCCTCCACAATACTCTATGCCTTCCAACACCTTCCACCAACATTTCTTGA 1242 47.34 MLDLNETTTNRVVMEDSETSNSSVVNADEVCNSRDEDSSVLIFDILKRENSGGGGASTELVTQSLFPVAGGWGETGSPVPRTHWLNLSSTADSGGGGPAELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFDISDYDEDMKQMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWETQMSQIIGKSGIEQRPYKGETMVDASNGGNGHNLDLSIGGIFNYHLSNSSQKLNIERPKNENNVCAYGVAGQQPHIPPSVWSGLYSGFFADNEERGREKRNNDSTKISTSWGWQMPTSMSMAMSIQGNASNNGIRARDQELAHVSKSAASSGFSSSSNFGSIYGQNNTALHNTLCLPTPSTNIS 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7870537 7874303 + Maker00009736 Lcy7g0808 637640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0808 413 ProSiteProfiles AP2/ERF domain profile. 124 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0808 413 MobiDBLite consensus disorder prediction 1 31 - -
Lcy7g0808 413 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677(InterPro)
Lcy7g0808 413 Pfam AP2 domain 124 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0808 413 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 20 241 - -
Lcy7g0808 413 MobiDBLite consensus disorder prediction 1 29 - -
Lcy7g0808 413 FunFam AP2-like ethylene-responsive transcription factor 123 182 - -
Lcy7g0808 413 CDD AP2 124 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0808 413 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g0808 413 SMART rav1_2 124 186 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0808 Lcy-Chr7:7870537 Lcy8g1865 Lcy-Chr8:44963989 2.05E-89 dispersed
Lcy5g0256 Lcy-Chr5:2409648 Lcy7g0808 Lcy-Chr7:7870537 1.22E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20419 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0808 K09284 - csv:101204131 624.394