Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0811 ATGTCGCCGTCAGAAATCGAACAGACAGAGGAGAAACGGTGTTGTCGAAACCCACGAACGAACCCCACTACGAATGCATGTCCTTCGAACGTCGGTGAACCCACGAACGAACCGCGATCTGAGGACAACGCCGATGAAAGGAGAAAAAACAAAGAGTTTGGGGAAAGAAGAAAGGAGAAAAAGAAGGAAGGGAGAGAAGAAAAAAAAATGTCGGCCGCTGGCAAGCGGCGATCGATGGCGGCTGGCGGTGGGGCTATGGAGAAGAAAGGATCTCCCCCTCACATGGCCGAGCCTCCCACCAGTCCCGCCGGCGGCAGCCACGAGAGCGGCGGCGAGCAGAGCCCCAACACCGCCGGCGTCCGCGAGCAGGACCGCTACCTCCCCATCGCCAACATCAGTCGGATCATGAAGAAGGCCTTGCCCGCTAATGGCAAGATCGCCAAGGACGCCAAGGATACCGTCCAGGAATGCGTCTCCGAATTCATCAGCTTCATCACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCGATGGCGACGTTGGGTTTCGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACAGAGAGGTAAATTTGTTTCTCGTTTTTTTTGGCTTCTACGTGGTTTTGTATTTACGTTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGATGCAGTCGGGGCCTTGCCTGGTCAGAATTCCCAGCAGTATATGCAGCCGGGAGCATTGGCCTACATAAACACTCAAGTAATAATCTTTCTCTTCTCTCAACTTGCCAACACGCTATTCAGGAATACCCTCCTTTTTATTGCTAATAATTGGATTGAAATTTATGGTTATTATTAG 909 50.5 MSPSEIEQTEEKRCCRNPRTNPTTNACPSNVGEPTNEPRSEDNADERRKNKEFGERRKEKKKEGREEKKMSAAGKRRSMAAGGGAMEKKGSPPHMAEPPTSPAGGSHESGGEQSPNTAGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYREVNLFLVFFGFYVVLYLRCDAKGSSRGGDESAKRDAVGALPGQNSQQYMQPGALAYINTQVIIFLFSQLANTLFRNTLLFIANNWIEIYGYY 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7893024 7900918 + Maker00009973 Lcy7g0811 637643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0811 302 MobiDBLite consensus disorder prediction 1 122 - -
Lcy7g0811 302 FunFam Nuclear factor Y, subunit B1 116 215 - -
Lcy7g0811 302 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 126 190 IPR003958 -
Lcy7g0811 302 Gene3D Histone, subunit A 115 260 IPR009072 GO:0046982(InterPro)
Lcy7g0811 302 Coils Coil 43 63 - -
Lcy7g0811 302 MobiDBLite consensus disorder prediction 18 37 - -
Lcy7g0811 302 MobiDBLite consensus disorder prediction 38 74 - -
Lcy7g0811 302 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 108 231 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lcy7g0811 302 MobiDBLite consensus disorder prediction 106 120 - -
Lcy7g0811 302 MobiDBLite consensus disorder prediction 1 17 - -
Lcy7g0811 302 ProSitePatterns NF-YB/HAP3 subunit signature. 157 173 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy7g0811 302 PRINTS CCAAT-binding transcription factor subunit A signature 154 172 - -
Lcy7g0811 302 PRINTS CCAAT-binding transcription factor subunit A signature 173 191 - -
Lcy7g0811 302 PRINTS CCAAT-binding transcription factor subunit A signature 192 210 - -
Lcy7g0811 302 SUPERFAMILY Histone-fold 123 212 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1843 Lcy-Chr6:38144011 Lcy7g0811 Lcy-Chr7:7893024 7.02E-51 dispersed
Lcy7g0811 Lcy-Chr7:7893024 Lcy8g1350 Lcy-Chr8:40251945 1.67E-52 dispersed
Lcy5g0258 Lcy-Chr5:2441316 Lcy7g0811 Lcy-Chr7:7893024 2.41E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20420 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0811 K08065 - csv:101223123 291.582