Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0833 ATGTCAAATTCCGAAACAGTCAACACCAATGGCGTCTCCAATGGCGCCTCCATCGACACCCACAAGAATCAGTCCTCTGCAAACGGAGCCCTCGTCGTCAAAAAGCCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGTCGTATCCGTATGCCCATCATCTGCGCCGCCCGTGTCTTCCAGCTGACTCGCGAACTCGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCTTCCATTATCGCCGCAACCGGCACCGGCACCACTCCCGCTAATTTCTCCTCCGTCTCTCTCTCCGTCAGAGGAAATGGCGGCTCCGCCTCTCTCTCTTCCCCTTCCTCCACTACCTCAACTCTCTCCCTCTCTCGCCCCCACGCTCTGTCTAGCCCCACGCCGTTTATCCTCGGCAAGCGCGTCCGCGCCGACGACGACAGTAAGGACGATGGCTTGGGAGTGGGTCCGGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCGAGTGGGTACTGGGCGATTCCGGCCAGACCGGATTACGGCCAGGTGTGGAGCTTTGCCGCCGCCGCGGCAGCGGCGGCTCCGTCTGAGATGGTGGTTCAACAGGGGATTTCTCAGCAGGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCGAGAGTGGGGAATTACCTTCCCGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGCGGTGGTTCCGGGCGGCGGGAAGATGACCCTCGCTGA 783 62.32 MSNSETVNTNGVSNGASIDTHKNQSSANGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPHALSSPTPFILGKRVRADDDSKDDGLGVGPAVGSIVGPTGPSGYWAIPARPDYGQVWSFAAAAAAAAPSEMVVQQGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8212236 8213018 + Maker00009831 Lcy7g0833 637665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0833 260 Pfam TCP family transcription factor 38 121 IPR017887 -
Lcy7g0833 260 MobiDBLite consensus disorder prediction 113 135 - -
Lcy7g0833 260 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 157 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Lcy7g0833 260 MobiDBLite consensus disorder prediction 1 31 - -
Lcy7g0833 260 MobiDBLite consensus disorder prediction 35 49 - -
Lcy7g0833 260 MobiDBLite consensus disorder prediction 1 49 - -
Lcy7g0833 260 ProSiteProfiles TCP domain profile. 38 92 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0833 K16221 - - csv:101206050 397.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1073 Lcy-Chr10:32925040 Lcy7g0833 Lcy-Chr7:8212236 4.56E-93 dispersed
Lcy5g2557 Lcy-Chr5:48286621 Lcy7g0833 Lcy-Chr7:8212236 3.10E-33 dispersed
Lcy6g0204 Lcy-Chr6:1832793 Lcy7g0833 Lcy-Chr7:8212236 6.29E-27 dispersed
Lcy7g0833 Lcy-Chr7:8212236 Lcy8g1921 Lcy-Chr8:45480176 6.75E-25 dispersed
Lcy7g0833 Lcy-Chr7:8212236 Lcy2g0580 Lcy-Chr2:4966705 1.17E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1073 . 43 264 TCP Transcription Factor Family AT5G23280 62.9 2.3e-64 243.0
Lcy7g0833 . 36 261 TCP Transcription Factor Family AT5G23280 59.1 2.2e-59 226.5
Lcy13g0617 . 3 344 TCP Transcription Factor Family AT2G45680 51.2 6.0e-71 265.4
Lcy5g2557 . 59 158 TCP Transcription Factor Family AT3G47620 75.7 7.8e-37 152.5
Lcy10g0080 . 115 380 TCP Transcription Factor Family AT3G27010 59.2 1.9e-60 230.3
Lcy3g1497 . 1 180 TCP Transcription Factor Family AT3G27010 51.0 4.6e-38 156.0
Lcy10g1073 . 1 262 TCP Transcription Factor Family AT5G08330 57.7 1.4e-66 250.4
Lcy7g0833 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 2.5e-60 229.6
Lcy3g0222 . 30 141 TCP Transcription Factor Family AT3G02150 68.1 3.3e-37 153.3
Lcy4g0720 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 6.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20422 None None None None Lcy TF