Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0840 ATGGCCATTGAGGTTGCTGCCAAGGCTGCCGCTGGTGCACCCGATGTTATGGGAGACTGCCCTTTCAGCCAGAGGGTTCTCTTAACTTTGGAGGAGAAGGAAGTTCCTTACGAATTGCATCTCATCGATTTATCCGACAAACCCAGTTGGTTCTTGGAAGTGAGCCCAGAAGGAAAGGTGCCGGTGGCGAAGATTGATGACAAATGGGTTCCTGACTCTGATGTCATTGTGGGGATTCTTGAGGAGAAGTATCCAGAGCCTTCTCTTGTTACCCCTCCTGAATTTTCTTCTGTGGGATCAAAGATAAATGGGGCTTTTGTAAAATTCTTGAAGAGCGAGGACCCAAATGATGGTTCAGAGCAGGCTTTGCTTGAAGAGTTGAATGCGTTAGACGAGCATCTTAAGGCACACGGTCCTTATGTTGCTGGAGAGAAGGTTACTGCTGTTGATTTGAGTCTGGCACCAAAGTTGTACAGTCTTGATATTGCTCTTGGCCATTTCAAAGAGTGGACTTTCCCTGAAAACTTAACCAGTTTATCCGCATACAAAGAGTTGCTTTTTGCTCGAGAATCTTTCATGAAGACGAAGTCTGCCCCCGAACATGTAATTTCTGGTTGGGAGCCCAAGATTCAAACACTCCCCCACTGCCCACATGATCTGGTCCTTGAAGCTGCGGTCAAGGCTGCCGTTGGTGCCCCTGATGTACTTGGGGACTGCCCTTTCAGCCATAGGGTTCTCTTAACTTTAGAGGAGAAGAAAGTTGCTTACAAAATGCATCTCATTGATCTCTCAGACAAACCCAGCTGGTTCTTGGAAGTGAGCCCTGAAGGGAAGGTGCCGGTTGTGAAGTTTGATGATAAATGGGTTCCTGATTCTGATGTCATTGTGGGGATTCTTGAGGAGAAGTATCCAGAGCCTTCGCTTGTTACTCCTCCTGAAGTTTCTTCTGTGGGATCAAAGATATTTGGTGCTTTTGTAACATTCTTGGAGAGCAAGGACCCAGATGATGGTTCAGAGCAGGCTTTCCTTGAAGAGTTGAAGGCGTTCAATGAGCATCTTAAGGCTCATGGTCCTTACGTCGCTGGAGAGAAGGTAACTGCTGTTGATTTGAGTTTGGCACCAAAGTTGTACCATGTTGATGTTGCTCTTGGCCATTTCAAGAAGTGGGCTATCCCCAAAGACTTGGCCAGTTTAATCGCCTACAAAGAGACTTTGCTAGCTTCTGAGATTGCCTGCAGTTTGAAATCTATTATGCTGGTTGGTTTCTGCTCAACCAAACTCGAATTTGCATTGCTTTTCGCTCGAGAATCTTTCGTGAAGACGAAGGCTGCCCCGGAACATGTAATTGCTGGATGGGAGCCCAAGGTGAATCCTGCATGA 1380 46.74 MAIEVAAKAAAGAPDVMGDCPFSQRVLLTLEEKEVPYELHLIDLSDKPSWFLEVSPEGKVPVAKIDDKWVPDSDVIVGILEEKYPEPSLVTPPEFSSVGSKINGAFVKFLKSEDPNDGSEQALLEELNALDEHLKAHGPYVAGEKVTAVDLSLAPKLYSLDIALGHFKEWTFPENLTSLSAYKELLFARESFMKTKSAPEHVISGWEPKIQTLPHCPHDLVLEAAVKAAVGAPDVLGDCPFSHRVLLTLEEKKVAYKMHLIDLSDKPSWFLEVSPEGKVPVVKFDDKWVPDSDVIVGILEEKYPEPSLVTPPEVSSVGSKIFGAFVTFLESKDPDDGSEQAFLEELKAFNEHLKAHGPYVAGEKVTAVDLSLAPKLYHVDVALGHFKKWAIPKDLASLIAYKETLLASEIACSLKSIMLVGFCSTKLEFALLFARESFVKTKAAPEHVIAGWEPKVNPA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8287498 8294060 + Maker00009846 Lcy7g0840 637672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0840 459 SFLD Main (cytGST) 238 385 - -
Lcy7g0840 459 SFLD Main (cytGST) 19 172 - -
Lcy7g0840 459 CDD GST_N_family 20 77 - -
Lcy7g0840 459 SFLD Glutathione Transferase (cytosolic) 19 172 IPR040079 -
Lcy7g0840 459 SFLD Glutathione Transferase (cytosolic) 238 385 IPR040079 -
Lcy7g0840 459 Pfam Glutathione S-transferase, C-terminal domain 339 396 - -
Lcy7g0840 459 Pfam Glutathione S-transferase, C-terminal domain 119 182 - -
Lcy7g0840 459 FunFam Glutathione S-transferase DHAR3 chloroplastic 220 308 - -
Lcy7g0840 459 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 66 212 IPR010987 -
Lcy7g0840 459 SUPERFAMILY GST C-terminal domain-like 97 210 IPR036282 -
Lcy7g0840 459 SUPERFAMILY Thioredoxin-like 18 87 IPR036249 -
Lcy7g0840 459 CDD GST_N_family 239 296 - -
Lcy7g0840 459 Pfam Glutathione S-transferase, N-terminal domain 20 82 IPR004045 -
Lcy7g0840 459 Pfam Glutathione S-transferase, N-terminal domain 239 301 IPR004045 -
Lcy7g0840 459 Gene3D - 90 212 - -
Lcy7g0840 459 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 3 209 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(InterPro)|GO:0045174(PANTHER)|GO:0098869(InterPro)
Lcy7g0840 459 FunFam Glutathione S-transferase DHAR3, chloroplastic 90 212 - -
Lcy7g0840 459 Gene3D Glutaredoxin 1 89 - -
Lcy7g0840 459 Gene3D Glutaredoxin 220 308 - -
Lcy7g0840 459 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 229 307 IPR004045 -
Lcy7g0840 459 FunFam Glutathione S-transferase DHAR3 chloroplastic 1 89 - -
Lcy7g0840 459 Gene3D - 309 459 - -
Lcy7g0840 459 SUPERFAMILY GST C-terminal domain-like 316 408 IPR036282 -
Lcy7g0840 459 FunFam Glutathione S-transferase DHAR3, chloroplastic 309 420 - -
Lcy7g0840 459 SUPERFAMILY Thioredoxin-like 238 306 IPR036249 -
Lcy7g0840 459 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 10 88 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0612 Lcy-Chr3:23078808 Lcy7g0840 Lcy-Chr7:8287498 9.32E-50 dispersed
Lcy7g0840 Lcy-Chr7:8287498 Lcy13g1039 Lcy-Chr13:22711472 1.17E-29 dispersed
Lcy7g0839 Lcy-Chr7:8278948 Lcy7g0840 Lcy-Chr7:8287498 2.78E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0840 K21888 - csv:101203666 359.762