Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0882 ATGGCAGATTCTGAGGATATTCAGCCCCTTGTATGTGATAATGGAACGGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCCCCAAGAGCTGTGTTTCCCAGTATTGTAGGCCGACCTCGCCACACTGGTGTGATGGTTGGCATGGGTCAGAAGGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTCTGAAATATCCAATTGAGCATGGTATTGTTAGTAACTGGGACGATATGGAAAAAATTTGGCATCATACTTTTTATAATGAGCTTCGTGTTGCCCCCGAGGAGCACCCAGTTCTCCTAACTGAGGCTCCTCTTAACCCGAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACCTTCAACACTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCTCTTCCACACGCCATCCTTCGTCTTGACCTGGCAGGCCGTGATCTCACAGACAACCTGATGAAAATCCTCACTGAGCGTGGATACTCTTTCACCACAACTGCCGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGTCATATATTGCCCTTGATTATGAACAGGAGATGGAGACATCCAAGACCAGCTCATCCGTGGAGAAGAGCTACGAGTTGCCTGATGGACAGGTGATCACCATCGGCGCTGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAACCCTCCATGATCGGGATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCCATCATGAAGTGTGATGTGGACATCAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCCCTCGCCCCAAGCAGCATGAAGATAAAGGTCGTGGCGCCACCGGAGAGAAAGTACAGTGTCTGGATTGGAGGATCCATCTTGGCATCCCTGAGCACCTTCCAACAGATAAGAATCAGGATAACACAAACTTTTGCCCCTTTTGATTGCAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAAAGGAAGAATAGGAAGATTCATTGGTGAAGAGATGGAGCAAAAGAATGGTGTGTTCTGA 1236 47.33 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQIRIRITQTFAPFDCRCGLPRQSMMNLDRRLCTGNASKGRIGRFIGEEMEQKNGVF 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8799316 8801046 - Maker00010130 Lcy7g0882 637714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0882 411 Gene3D Actin; Chain A, domain 4 182 273 - -
Lcy7g0882 411 FunFam Major actin 260 340 - -
Lcy7g0882 411 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lcy7g0882 411 FunFam Actin, alpha skeletal muscle 3 167 - -
Lcy7g0882 411 FunFam Actin, alpha skeletal muscle 36 73 - -
Lcy7g0882 411 Pfam Actin 5 359 IPR004000 -
Lcy7g0882 411 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lcy7g0882 411 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lcy7g0882 411 PRINTS Actin signature 63 85 IPR004000 -
Lcy7g0882 411 PRINTS Actin signature 51 62 IPR004000 -
Lcy7g0882 411 PRINTS Actin signature 117 130 IPR004000 -
Lcy7g0882 411 PRINTS Actin signature 238 254 IPR004000 -
Lcy7g0882 411 PRINTS Actin signature 28 37 IPR004000 -
Lcy7g0882 411 PRINTS Actin signature 142 161 IPR004000 -
Lcy7g0882 411 SMART actin_3 7 371 IPR004000 -
Lcy7g0882 411 Gene3D - 10 359 - -
Lcy7g0882 411 FunFam Actin, muscle 182 273 - -
Lcy7g0882 411 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lcy7g0882 411 Gene3D - 140 340 - -
Lcy7g0882 411 PANTHER ACTIN 8 354 IPR004000 GO:0005737(PANTHER)
Lcy7g0882 411 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1441 Lcy-Chr1:13981352 Lcy7g0882 Lcy-Chr7:8799316 9.63E-264 dispersed
Lcy5g0597 Lcy-Chr5:6867794 Lcy7g0882 Lcy-Chr7:8799316 7.66E-256 dispersed
Lcy7g0882 Lcy-Chr7:8799316 Lcy8g0203 Lcy-Chr8:5066839 6.21E-258 dispersed
Lcy10g1858 Lcy-Chr10:42794633 Lcy7g0882 Lcy-Chr7:8799316 1.14E-257 transposed
Lcy7g0882 Lcy-Chr7:8799316 Lcy8g1811 Lcy-Chr8:44507180 1.19E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0882 K10355 - csv:101214247 732.635