Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0893 ATGGCTGCCATTTCCATTTCTCTTCTCGCCGTTCTCCTCTCGGTGCTCGCCGTCGACGCTAGGATCCCCGGAGTTTACTCCGGCGGCCAGTGGCAGAGCGCTCATGCTACATTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGCGGTGCTTGCGGTTACGGTAACTTATACAGCCAAGGCTACGGCGTGAACACCGCGGCGTTGAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGCCATTCCGGTAGTCCGTCGATCTTCATCACCGCCACGAACTTTTGCCCTCCGAACTACGCTCTTCCGAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATTGTTCCCGTCTCTTATCGCAGTGAAATTGGAAAAACCGGGGTGCCATGCCGGAAACAGGGAGGAATCAGGTTCACAATCAACGGCTTCCGGTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGCGAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAGAACTGGCAATCAAACGCCATCTTGGTCGGTCAGTCACTGTCGTTCAGGGTGACAGCCAGTGACCGCCGCACCTCCACTTCTTGGAACATCGTCCCCTCCAACTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGGTCTAA 792 56.31 MAAISISLLAVLLSVLAVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRSEIGKTGVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAILVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8939840 8942544 - Maker00009740 Lcy7g0893 637725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0893 263 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Lcy7g0893 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664(InterPro)
Lcy7g0893 263 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Lcy7g0893 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664(InterPro)
Lcy7g0893 263 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Lcy7g0893 263 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Lcy7g0893 263 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Lcy7g0893 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Lcy7g0893 263 FunFam Expansin 20 165 - -
Lcy7g0893 263 CDD DPBB_EXPA_N 30 164 - -
Lcy7g0893 263 SUPERFAMILY Barwin-like endoglucanases 30 187 IPR036908 -
Lcy7g0893 263 Pfam Lytic transglycolase 66 153 IPR009009 -
Lcy7g0893 263 Gene3D - 169 261 IPR036749 -
Lcy7g0893 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 169 IPR007112 -
Lcy7g0893 263 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Lcy7g0893 263 Gene3D - 19 164 IPR036908 -
Lcy7g0893 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Lcy7g0893 263 PANTHER EXPANSIN-A15 8 261 IPR002963 GO:0009664(InterPro)
Lcy7g0893 263 SMART dpbb_1 66 153 IPR007112 -
Lcy7g0893 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Lcy7g0893 263 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Lcy7g0893 263 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Lcy7g0893 263 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Lcy7g0893 263 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Lcy7g0893 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
Lcy7g0893 263 FunFam Expansin 169 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1434 Lcy-Chr1:13900248 Lcy7g0893 Lcy-Chr7:8939840 1.07E-168 dispersed
Lcy7g0893 Lcy-Chr7:8939840 Lcy7g1071 Lcy-Chr7:11465885 2.06E-125 dispersed
Lcy10g1867 Lcy-Chr10:42862024 Lcy7g0893 Lcy-Chr7:8939840 4.44E-157 wgd
Lcy11g0175 Lcy-Chr11:1996279 Lcy7g0893 Lcy-Chr7:8939840 8.94E-152 wgd
Lcy7g0893 Lcy-Chr7:8939840 Lcy8g1801 Lcy-Chr8:44424220 2.21E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0893 - - - 0.0