Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0903 CATCATATAATTGAGACAATGACAGGGCTTAACTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTCTTTGCTCCTTTCTTCAGCTATGATGAAGCTACTTCCCATTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACACCTCCCCATGCACATCCGAAGCCACGCTGCGATTACCGTTGCCTACGAAGCCCTCGAGCGCATGCGAGATCCCACCTATGGCTGTGTCGCGCATATCTTCGCCTTGCAACAAGAGATCATAAGCTTGCAAGAGGAGATAGATATTCTGGGGAGCCAAATAGCCAACTTCACCGTTAATAGCGGCAGGCTTGCGGCGGTCGAGAATCCATTTATAGAGCTTCAAGCCTCACAGCAATTGAATGATTTTGTGATGAACACAAATGATTATCAAAATGAGCTGCTTTCTCAGCTACCCCACCAAACTTTTGATCATGCCCAAAATGAAGATCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGAAGGGTTTTTTGGGTGCAACCCAAATAATGTTGTGGAGAGATCAGCCTTTGATGTTTCACTTGAGGAGAATTTTGCTTGTTATCCATGGTAG 657 43.53 HHIIETMTGLNSSSSSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIISLQEEIDILGSQIANFTVNSGRLAAVENPFIELQASQQLNDFVMNTNDYQNELLSQLPHQTFDHAQNEDQMISPLFCLGEEEGFFGCNPNNVVERSAFDVSLEENFACYPW 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9109038 9110028 + Maker00009777 Lcy7g0903 637735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0903 218 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Lcy7g0903 218 Pfam Lateral organ boundaries (LOB) domain 19 115 IPR004883 -
Lcy7g0903 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 17 171 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1283 Lcy-Chr3:38744123 Lcy7g0903 Lcy-Chr7:9109038 1.43E-40 dispersed
Lcy7g0903 Lcy-Chr7:9109038 Lcy8g1638 Lcy-Chr8:42979317 1.69E-30 dispersed
Lcy7g0903 Lcy-Chr7:9109038 Lcy11g1899 Lcy-Chr11:42713862 2.31E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20425 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0903 K13945 - csv:101204875 328.176