Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0904 ATGGCAAATCGATGGTGGGCTGAAAATATACCCACCACTACAGATAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCCGCCGATGAAGAGAACAACTCCGGCAGCCAAGAGAGAGCTGAACCAGGCACCAGCTCCAGCACGCGCCGCCCACGTGGCCGGCCTCCGGGATCTAAGAACAAGCCAAAACCACCGGTGGTGGTCACGAAGGAGAGCCCTGATGCCCTCCGGAGCCACGTTTTGGAGATCGGCAGCGGCAGCGACATTGTCGAAAGCATCTCAAACTTCGCCCAACGCCGCCAGCGAGGGGTTTCAGTCCTCAGTGGAAATGGGGTCGTCGCCAATGTCACTCTAAGGCATCCGGCCGCCCCTGGCGGCGTTATTACGCTACAGGGACGATTCGATATATTGTCGCTCTCCGGTGCTTTTCTGCCTGCCCCAGCTCCGCCGGGGGCTACCGGGTTGACAGTTTACTTGGCTGGAGGGCAGGGGCAGGTTGTTGGTGGCATTGTCGTCGGTGCACTCATTGCAACCGGTCCAGTTATTGTCATTGCTGCTACTTTCACCAATGCTACATTCGAGCGGCTGCCGCTCGAGGACGAGGAGGCAGCCACCGGAGACAAGTCTGGAAATAGCCAGAACAATTCAACTTCTCAGAGCATGGGAGAGCAGCAGCAGCAGCAGCAACAACAACAGCCTTCAATGGGAACTATACATATTCTCGAACTATCAAAACTCGCGAAACAAACGCCCCCTAAAGGATTTGTAACGATGGAGGAAGCCTTATTTAGCTTTGGGTTAAAGGAATGGAAATGGACATGGGATATGGATTCGACATGA 855 54.39 MANRWWAENIPTTTDSSTSNPYSTPLKQSLEAADEENNSGSQERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALIATGPVIVIAATFTNATFERLPLEDEEAATGDKSGNSQNNSTSQSMGEQQQQQQQQQPSMGTIHILELSKLAKQTPPKGFVTMEEALFSFGLKEWKWTWDMDST 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9115055 9116820 - Maker00009884 Lcy7g0904 637736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0904 284 MobiDBLite consensus disorder prediction 1 58 - -
Lcy7g0904 284 CDD DUF296 82 165 IPR005175 -
Lcy7g0904 284 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Lcy7g0904 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 240 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy7g0904 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Lcy7g0904 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Lcy7g0904 284 Gene3D - 81 211 - -
Lcy7g0904 284 ProSiteProfiles PPC domain profile profile. 78 218 IPR005175 -
Lcy7g0904 284 MobiDBLite consensus disorder prediction 205 240 - -
Lcy7g0904 284 MobiDBLite consensus disorder prediction 1 78 - -
Lcy7g0904 284 MobiDBLite consensus disorder prediction 212 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0350 Lcy-Chr13:3921555 Lcy7g0904 Lcy-Chr7:9115055 1.08E-68 dispersed
Lcy13g1472 Lcy-Chr13:33305642 Lcy7g0904 Lcy-Chr7:9115055 2.90E-52 dispersed
Lcy4g2010 Lcy-Chr4:46595440 Lcy7g0904 Lcy-Chr7:9115055 1.29E-82 dispersed
Lcy6g2215 Lcy-Chr6:46493877 Lcy7g0904 Lcy-Chr7:9115055 1.18E-71 dispersed
Lcy7g0904 Lcy-Chr7:9115055 Lcy9g2360 Lcy-Chr9:47863649 4.09E-70 dispersed
Lcy10g2243 Lcy-Chr10:46222945 Lcy7g0904 Lcy-Chr7:9115055 6.82E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0904 - - - 0.0