Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0971 ATGGAAGGGAAGGAAGAAGACGTTAGGCTCGGAGCCAACAAGTTCAACGAGAGGCAGCCCATTGGGACGGCGGCCCAGAGCCAGGACGACGCCAAGGACTACAAGGAGCCACCGCCGGCACCGCTGTTCGAGCCGGAGGAGCTCACTTCATGGTCCTTTTACAGAGCTGGAATTGCGGAGTTCTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCGTCCGGTCCAACGAAGTCAACGGCAACACCTGCAAGACCGTTGGAATTCAGGGCATTGCTTGGGCTTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGGAGGACACATAAACCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGCTGTCGTTGACCAGGGCAATTTTCTACATAGTGATGCAGTGTCTCGGAGCCATTTGCGGCGCCGGCGTCGTCAAGGGCTTCCAACCCAAGCCCTACGACAGGCTCAACGGCGGAGCTAACATGGTCAGCCCCGGCTACACCAAGGGCGACGGCCTCGGCGCCGAGATCGTCGGCACCTTTATCCTTGTTTACACCGTCTTCTCCGCCACCGACGCCAAACGCAGCGCCAGAGACTCACATGTTCCGATCTTGGCACCGTTGCCAATTGGGTTCGCAGTGTTCTTAGTTCACTTAGCCACGATCCCGATCACCGGCACCGGCATCAACCCAGCTCGGAGTTTGGGCGCCGCCATTATCTACAACCACGACAAAGCCTGGGATGACCACGTGGTGGATTTTCTGGGTCGGACCGTTCATCGGCGCCGCGCTGGCAGCTCTGTACCACCAAGTTGTAATCAGAGCCATCCCCTTCAAGTCCAAGTGAAATCTCATCGAATCACAGCCGTCCGATGCCACGAAATCCCATCTTTAAATTTGGCTGTTGTGTTGCATTTTGTGTTGTAA 963 56.8 MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEVNGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLNGGANMVSPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNHDKAWDDHVVDFLGRTVHRRRAGSSVPPSCNQSHPLQVQVKSHRITAVRCHEIPSLNLAVVLHFVL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9971044 9972505 - Maker00009812 Lcy7g0971 637803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0971 320 NCBIfam MIP family channel protein 59 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0971 320 Pfam Major intrinsic protein 47 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0971 320 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Lcy7g0971 320 CDD MIP 55 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0971 320 SUPERFAMILY Aquaporin-like 46 266 IPR023271 -
Lcy7g0971 320 MobiDBLite consensus disorder prediction 1 39 - -
Lcy7g0971 320 Gene3D Glycerol uptake facilitator protein. 40 271 IPR023271 -
Lcy7g0971 320 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0971 320 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0971 320 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0971 320 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0971 320 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0971 320 FunFam Probable aquaporin PIP1-2 40 278 - -
Lcy7g0971 320 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 272 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1639 Lcy-Chr12:36747682 Lcy7g0971 Lcy-Chr7:9971044 7.88E-157 dispersed
Lcy7g0971 Lcy-Chr7:9971044 Lcy8g1900 Lcy-Chr8:45259851 1.82E-127 dispersed
Lcy7g0971 Lcy-Chr7:9971044 Lcy7g0972 Lcy-Chr7:9978708 1.17E-203 tandem
Lcy5g0125 Lcy-Chr5:1344583 Lcy7g0971 Lcy-Chr7:9971044 1.33E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0971 K09872 - csv:101214512 511.531