Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0972 ATGAGGAAAATGTCTTCGGTGAGTGGTAACGCCGATACTCCCCAAGGCAAACGACATGAGGAAAATGTCCTCGGTGGAGTGGTAACCCCGATACTCCCCGAGGCAATCGACACACAGAAATGTCCTTGGAGGAGTGGTAACCCCGATACTCCCCAAGGCAAACGACATGAGGAAAATGTCCTCGGCGGAGTGGTAACCCCGATACTCCCCGAGGCAAACGACGCGCAGAAAATCCCCGGAGTTAGAGCCAAGGCTTGGATCAGAATCATACCAATAGAGGAGATGGTCGAGGCCGACCAGGCTACATTAAGAAAGATGACGCTGAAATTGTTGTGGAAGAGGGCCAAGGCCGACGAGGTCATGCCCATACTATATTTCTACAGGAAGAGGGCTGAGGCCGACCAGGCCATGCCCATACTATATTTCTACAAGAGTAGGGCCAAAGCCGACCAGGCCATGCCCGTACCATATTTTTGCAGGAATAGAGCCAAGGTCGACCAGGCCAAACACATTCTAAGTGGGGCTTCAAAACAGAGGAGTGGACTGAACAACGTCCAAAACGAGAGACAAAAGGCACAAAAGTTTGGACTCGCTCCAAACGTTAGCCTCGGCCTCATCCCGAGGCCGAGGCCGAGCCCAAGGAGACAGTTAGGAAACGGAACCCAGAGGAAGAACAGGCCAAAGGATCGGGCCAAAGCCGAAGGGATCGGGCTTTTGGCCCGACCCCCTACTCGCCCTCGGCCTCAAGTCGAGACCGAGGCCGAGCTCTTCCGCCTCCATTTGGTCCCTAGTGTCCCCGGCTGCCTCGGTTCCACTTGGTTCAGCTCGAATCGCCTCCGAAGTCCTAAAAACCCTAGGAGCGTGAGCAAGCCACGTCTTCCCCTTCAAATAAATTCACTGTTGGAGGCACACGAGGGTCAGACCTCTCCATCTCCATTCTTCAGTCGCAGAAGAAACAGAGAGCTCAAGGAACCAGCCACAATGGAGGGAAAAGAAGAAGATGTACGCTTGGGAGCCAACAAGTTCACCGAGAGGCAGCCCATTGGGACGGCGGCGCAGAGCCAGGACGACGCCAAGGACTACAAGGAGCCACCGCCGGCGCCGCTGTTCGAACCGGAGGAGCTCACTTCCTGGTCCTTTTACAGAGCCGGAATCGCTGAGTTCTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCGTCCGGTCCAACGAAGCCAACGGCAACACCTGCAAGACCGTCGGAATTCAGGGCATTGCTTGGGCTTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGGAGGACACATAAACCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGCTGTCGTTGACCAGGGCAATTTTCTACATAGTGATGCAGTGTCTCGGAGCCATTTGCGGCGCCGGCGTCGTCAAGGGCTTCCAACCCAAGCCCTACGACAGGCTCAACGGCGGAGCTAACATGGTCAGCCCCGGCTACACCAAAGGCGACGGCCTCGGCGCTGAGATCGTCGGCACCTTTATCCTTGTTTACACCGTCTTCTCCGCCACCGACGCCAAACGCAGCGCCAGAGACTCACATGTTCCGATCTTGGCACCGTTGCCAATTGGGTTCGCAGTGTTCTTAGTTCACTTAGCCACGATCCCGATCACCGGCACCGGCATCAACCCAGCTCGGAGTTTGGGCGCCGCCATTATCTACAACCACGACAAAGCCTGGGATGATCACGTGGTGGATTTTCTGGGTCGGACCGTTCATCGGAGCAGCGTTGGCAGCTTTATACCACCAAGTGGTGATCAGAGCCATGCCCTTCAAGTCCAAGTGAAGATCTTCCCCTCTATAAATAATGTTTTTGTTCGTCATTAA 1905 55.43 MRKMSSVSGNADTPQGKRHEENVLGGVVTPILPEAIDTQKCPWRSGNPDTPQGKRHEENVLGGVVTPILPEANDAQKIPGVRAKAWIRIIPIEEMVEADQATLRKMTLKLLWKRAKADEVMPILYFYRKRAEADQAMPILYFYKSRAKADQAMPVPYFCRNRAKVDQAKHILSGASKQRSGLNNVQNERQKAQKFGLAPNVSLGLIPRPRPSPRRQLGNGTQRKNRPKDRAKAEGIGLLARPPTRPRPQVETEAELFRLHLVPSVPGCLGSTWFSSNRLRSPKNPRSVSKPRLPLQINSLLEAHEGQTSPSPFFSRRRNRELKEPATMEGKEEDVRLGANKFTERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLNGGANMVSPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNHDKAWDDHVVDFLGRTVHRSSVGSFIPPSGDQSHALQVQVKIFPSINNVFVRH 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9978708 9985811 - Maker00010088 Lcy7g0972 637804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0972 634 CDD MIP 382 595 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0972 634 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 332 599 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Lcy7g0972 634 MobiDBLite consensus disorder prediction 200 248 - -
Lcy7g0972 634 Gene3D Glycerol uptake facilitator protein. 367 599 IPR023271 -
Lcy7g0972 634 Pfam Major intrinsic protein 374 596 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0972 634 SUPERFAMILY Aquaporin-like 373 593 IPR023271 -
Lcy7g0972 634 PRINTS Major intrinsic protein family signature 465 484 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0972 634 PRINTS Major intrinsic protein family signature 550 572 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0972 634 PRINTS Major intrinsic protein family signature 382 401 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0972 634 PRINTS Major intrinsic protein family signature 428 452 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0972 634 PRINTS Major intrinsic protein family signature 514 532 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0972 634 ProSitePatterns MIP family signature. 446 454 IPR022357 -
Lcy7g0972 634 MobiDBLite consensus disorder prediction 273 292 - -
Lcy7g0972 634 MobiDBLite consensus disorder prediction 316 340 - -
Lcy7g0972 634 NCBIfam MIP family channel protein 386 595 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g0972 634 MobiDBLite consensus disorder prediction 304 366 - -
Lcy7g0972 634 FunFam Probable aquaporin PIP1-2 367 606 - -
Lcy7g0972 634 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0125 Lcy-Chr5:1344583 Lcy7g0972 Lcy-Chr7:9978708 6.00E-149 dispersed
Lcy7g0972 Lcy-Chr7:9978708 Lcy8g1900 Lcy-Chr8:45259851 3.33E-123 dispersed
Lcy7g0971 Lcy-Chr7:9971044 Lcy7g0972 Lcy-Chr7:9978708 1.17E-203 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0972 K09872 - csv:101214512 507.679