Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g0988 | ATGGCTTCAATCTCTGCCAGCCCTCGCACCGTCGAAGACATATTCAAGGATTACAGCGCTCGACGCACTGGCCTTGTGCGAGCCCTCACTTACGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCCAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACCTTGGTGCTCGACTCAACCGCAATGAGCGGTAA | 354 | 53.11 | MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYLGARLNRNER | 117 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 10289649 | 10290530 | + | Maker00028728 | Lcy7g0988 | 637820 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g0988 | 117 | Pfam | Alfin | 10 | 117 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
| Lcy7g0988 | 117 | PANTHER | CPG BINDING PROTEIN | 7 | 117 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy6g1123 | Lcy-Chr6:12809765 | Lcy7g0988 | Lcy-Chr7:10289649 | 2.67E-55 | dispersed | |
| Lcy5g0103 | Lcy-Chr5:1075456 | Lcy7g0988 | Lcy-Chr7:10289649 | 1.44E-68 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy7g0988 | K26274 | - | csv:101211934 | 237.269 |