Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0990 ATGCTGTGGGAAGAAGTGAAGTCGTGGTGGAAGCGACAACCGAAGAATGGAGAACAAACGGAAAGGGAGACTGACGGAGGCCATCAAAGGCGAGGATTGGTATGGTCAGAGATGGAAACCTGGCGGAAACACAGACCGAAGGATAATGAACGGATGAGGGAGGCGGACACGGGCCATCACCGGCGGCACCTTCTGATTTGGGCGGATAAGCATTCTTCGAGACATCAACTCAAGCGTCGAGGAGAGGTGGTGGTAGGAATCGGAAGGGATGGCTGTGAAGAGACCTCTGATGGGAGCCATTACCAGCGGCGAAGGCGAGCATGGAAGAAGTCGCAAGGTAGAAGACGGCGCAAAAGGTCGGCAAGTGACTTATCGCTAACTCAGATGGGCTTAAACCCTAACCCTAATCACGAGGAAGTAAATGAGCCGAAAAGAAGAGAGAATCAAGGGCTGGCTGGGCAGGAGAAGAATGGGCTGTCTAGTATGGATAAGTGTGAATCTCTAGCGCACGTTTACAATGGGTGTAGGCATGTAAATAAGAAAGGGGAAATAGGTGTGTGCACGTTGGCTGTTTTAACAATTGCTTTGATCTATAATACTATAAAACTTGTGCTCTCGTCTTTCTACAGGAAGCGACTATTTAGTATGATTAATGATCTACCAACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACTAAGAGGTTACTAGATGGGTCGATTAGAAACAGCAATACGAAGCTACTCGATGAGAGTTATGGAGATGACGAAGATGAGCATGGTGATACTTTCTGTGGGAGCTGCGGAGGGAACTACAATGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCTGCTAAGGCAGAAAATATCAAGCAGTACAAATGCCCCAATTGCAGCATGAAGAGAGGAAGACCGTAG 1005 47.26 MLWEEVKSWWKRQPKNGEQTERETDGGHQRRGLVWSEMETWRKHRPKDNERMREADTGHHRRHLLIWADKHSSRHQLKRRGEVVVGIGRDGCEETSDGSHYQRRRRAWKKSQGRRRRKRSASDLSLTQMGLNPNPNHEEVNEPKRRENQGLAGQEKNGLSSMDKCESLAHVYNGCRHVNKKGEIGVCTLAVLTIALIYNTIKLVLSSFYRKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDEHGDTFCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGRP 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10309223 10312807 + Maker00028731 Lcy7g0990 637822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0990 334 ProSitePatterns Zinc finger PHD-type signature. 281 327 IPR019786 -
Lcy7g0990 334 ProSiteProfiles Zinc finger PHD-type profile. 278 330 IPR019787 -
Lcy7g0990 334 CDD PHD_AL_plant 280 330 IPR044104 -
Lcy7g0990 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 328 IPR013083 -
Lcy7g0990 334 SUPERFAMILY FYVE/PHD zinc finger 269 332 IPR011011 -
Lcy7g0990 334 MobiDBLite consensus disorder prediction 89 146 - -
Lcy7g0990 334 PANTHER CPG BINDING PROTEIN 198 333 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy7g0990 334 MobiDBLite consensus disorder prediction 103 117 - -
Lcy7g0990 334 Pfam PHD-finger 281 327 IPR019787 -
Lcy7g0990 334 SMART PHD_3 280 328 IPR001965 -
Lcy7g0990 334 FunFam PHD finger alfin-like protein 273 329 - -
Lcy7g0990 334 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0990 Lcy-Chr7:10309223 Lcy5g0103 Lcy-Chr5:1075456 2.45E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20429 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0990 K26274 - csv:101211934 251.136