Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g0990 | ATGCTGTGGGAAGAAGTGAAGTCGTGGTGGAAGCGACAACCGAAGAATGGAGAACAAACGGAAAGGGAGACTGACGGAGGCCATCAAAGGCGAGGATTGGTATGGTCAGAGATGGAAACCTGGCGGAAACACAGACCGAAGGATAATGAACGGATGAGGGAGGCGGACACGGGCCATCACCGGCGGCACCTTCTGATTTGGGCGGATAAGCATTCTTCGAGACATCAACTCAAGCGTCGAGGAGAGGTGGTGGTAGGAATCGGAAGGGATGGCTGTGAAGAGACCTCTGATGGGAGCCATTACCAGCGGCGAAGGCGAGCATGGAAGAAGTCGCAAGGTAGAAGACGGCGCAAAAGGTCGGCAAGTGACTTATCGCTAACTCAGATGGGCTTAAACCCTAACCCTAATCACGAGGAAGTAAATGAGCCGAAAAGAAGAGAGAATCAAGGGCTGGCTGGGCAGGAGAAGAATGGGCTGTCTAGTATGGATAAGTGTGAATCTCTAGCGCACGTTTACAATGGGTGTAGGCATGTAAATAAGAAAGGGGAAATAGGTGTGTGCACGTTGGCTGTTTTAACAATTGCTTTGATCTATAATACTATAAAACTTGTGCTCTCGTCTTTCTACAGGAAGCGACTATTTAGTATGATTAATGATCTACCAACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACTAAGAGGTTACTAGATGGGTCGATTAGAAACAGCAATACGAAGCTACTCGATGAGAGTTATGGAGATGACGAAGATGAGCATGGTGATACTTTCTGTGGGAGCTGCGGAGGGAACTACAATGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCTGCTAAGGCAGAAAATATCAAGCAGTACAAATGCCCCAATTGCAGCATGAAGAGAGGAAGACCGTAG | 1005 | 47.26 | MLWEEVKSWWKRQPKNGEQTERETDGGHQRRGLVWSEMETWRKHRPKDNERMREADTGHHRRHLLIWADKHSSRHQLKRRGEVVVGIGRDGCEETSDGSHYQRRRRAWKKSQGRRRRKRSASDLSLTQMGLNPNPNHEEVNEPKRRENQGLAGQEKNGLSSMDKCESLAHVYNGCRHVNKKGEIGVCTLAVLTIALIYNTIKLVLSSFYRKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDEHGDTFCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGRP | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 10309223 | 10312807 | + | Maker00028731 | Lcy7g0990 | 637822 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g0990 | 334 | ProSitePatterns | Zinc finger PHD-type signature. | 281 | 327 | IPR019786 | - | |
Lcy7g0990 | 334 | ProSiteProfiles | Zinc finger PHD-type profile. | 278 | 330 | IPR019787 | - | |
Lcy7g0990 | 334 | CDD | PHD_AL_plant | 280 | 330 | IPR044104 | - | |
Lcy7g0990 | 334 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 270 | 328 | IPR013083 | - | |
Lcy7g0990 | 334 | SUPERFAMILY | FYVE/PHD zinc finger | 269 | 332 | IPR011011 | - | |
Lcy7g0990 | 334 | MobiDBLite | consensus disorder prediction | 89 | 146 | - | - | |
Lcy7g0990 | 334 | PANTHER | CPG BINDING PROTEIN | 198 | 333 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Lcy7g0990 | 334 | MobiDBLite | consensus disorder prediction | 103 | 117 | - | - | |
Lcy7g0990 | 334 | Pfam | PHD-finger | 281 | 327 | IPR019787 | - | |
Lcy7g0990 | 334 | SMART | PHD_3 | 280 | 328 | IPR001965 | - | |
Lcy7g0990 | 334 | FunFam | PHD finger alfin-like protein | 273 | 329 | - | - | |
Lcy7g0990 | 334 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy7g0990 | Lcy-Chr7:10309223 | Lcy5g0103 | Lcy-Chr5:1075456 | 2.45E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20429 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy7g0990 | K26274 | - | csv:101211934 | 251.136 |