Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0994 ATGGTTCGGTCTCACGCCAAGGCCAAGACTAATCACCACAACTCCGAGGTCTTTGTCCTCAAAATGCCAAGTATGAGGGAGTTTCTACTTTGTCTAGTTCGTCCTATCTTGCAGGATAACAAAGAAGTCATACATAAGTCGGCACGAGACAAGAGTCGTACTCTTAAATCGGGCTTAAGGAGCTCAGCCTATAGCAGAGTTGACAAGGACAATCGGACAGAGGTGGGACCAGAAAGCCGACCCAGAGGAAGACCGGACCAAAGGGTTGGGCCAATTTGGCCCGACCCATATGGTCAGCCGAGGCATAAGGCCGAGGCCGACCATTTGGCCTGCGGGAGCGGGCCGAGCTTGGCCACCTCCCTTCGGTCCCTGATGTCCCTGACCGCCCCGGTTTCACCTGATCATTTGAAGTCCGGCGTCGACGAAAATCCTAAGGGGAAATCTATAAAAAGGGAGACCGCACACACATTCAGGTGGATAAAACCCCCGTTTGTTTCTTCCATTCTTAGCACCTCAAACTCCCCCTCCAATCGAGGCCTTCTCGATTTCTTCCTTTATCCCCTCTTGGTGCAGAGTATTTTCAACTGTTTGGAGCTGTTTCTTCGTTCAATTTACTTCCAGGAGTTGGATATGTGCAGTGGCTCAAAGAATAAAGTTGCTTCCTCGAATTCCGCCATGGAAGCCAAGTCTCAGAAGCTTAACGATGGGGCTTTTTTCTCTGCGAGTTCAATCTTGCTTGAACTGTCGGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGGTTTGGATGTTGATGAACCAAGCTGCTGGTATGGGAGAGGAATTGGGTCTAAGAAGATGGGTTTTGAAAAAAGAACTCCACTGATGATTGCTGCCATGTTTGGGAGCTCCAAGGTTGTCAAGTACTTAATTGAGTCAGGCAAGGTTGATGTCAACAGGGCTTGTGGTTCAGATATGGCCACTGCCCTTCACTGTGCCACTGCTGGTGGCTCTGGCTCTTCCCTTGAGGCCATCAAGCTCTTGCTCGACGGATCTGCCGATGTCGATTGTGTCGATGCCAACGGGAGAAAACCTGTTGATTTGATTGTTTCAGCTTGCAGGATGGTGTGTAATTCAGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATCTGAGCCTTTACCTTGAAGAAGACCAACAGAAGATCACAGCTTCCCAATCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCGGTTGATGTATCGCTGCCCGACATCAACAGCGGGATATACGGTACCGATGATTTCAGGATGTATACCTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCGCACGATTGGACCGAGTGCCCGTTCGTTCATCCTGGCGAGAACGCTAGGCGCAGAGACCCCAGGAAGTACCCTTACAGTTGCGTCCCGTGCCCCGAGTTCCGCAAGGGGGCTTGCCCAAAGGGAGATTCCTGCGAGTATGCACATGGTGTCTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCAGGCTCTGCAAGGATGAGACTGGCTGCACAAGGAAGGTTTGCTTCTTTGCTCACAAACCTGAAGAGTTGCGCCCTGTATATGCTTCAACAGGCTCAGGCATGCCTTCGCCGAGGTCTCTTTCGAGCAGCGCTGCAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCATCATCGTTGTCGTTGCCAACTACTTCGACGCCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCTAAGAATGGAAACCTGTGGCAAAACAAGATTAACCTTACCCCTCCTGCTCTTCAGCTCCCTGGTAGTCGGTTAAAGACCACCTTGAGTGCAAGAGATTTGGATCTAGAGATGGAATTGCTCGGATTGGAAAAGAATGCCAGCCAATTACAACATCAACAGCAGTTGATCGACGAGATAGCCCGGCTCTCCTCTCCATCTTACTGGAGCACAGATGTAAGCAGGAGTGCAGAGTTGAAGGCATCAAACCTTGATGACATGTTTCGATCATTAGATTCTTCTTTGTTGTCTCAGTTGCAGGGCACCTCACTGAAAACGCCAATCTCAGCTCAGGTTCAATCTCCCACCGGGCTGCAGATGCGCCAAAACATGAACCAACTCCGTGCAAGTTACCCGGCTAACTTATCATCCTCACCTGTAAAGAAACCCTCCTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGCCCCGTCTTCCCGGGTTTACCACAGCTGCAAACTCCGCAGCTACAATGTCTTCCCATCTCTCAGATTGGAACTCACCTGATGGCAAACTAGACTGGGGAATGAACGGCAATGATCTCAACAAACTCAAGAAATCTGCATCGTTCGGGATCCGAAACAACGGCATAAAAGCTCCCACCTTCGCGCCTTCAGCAGGGGAACCTGATGTCTCTTGGGTTAACTCCTTGGTTAAAGATGTTCCCTCCGACAGCTTCGAGCTGTTCGGAGCTGAGAAGCGGCAATACAACCTCAAAAGAGAAATCAATGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2691 50.09 MVRSHAKAKTNHHNSEVFVLKMPSMREFLLCLVRPILQDNKEVIHKSARDKSRTLKSGLRSSAYSRVDKDNRTEVGPESRPRGRPDQRVGPIWPDPYGQPRHKAEADHLACGSGPSLATSLRSLMSLTAPVSPDHLKSGVDENPKGKSIKRETAHTFRWIKPPFVSSILSTSNSPSNRGLLDFFLYPLLVQSIFNCLELFLRSIYFQELDMCSGSKNKVASSNSAMEAKSQKLNDGAFFSASSILLELSASDDVEGFKREVEEKGLDVDEPSCWYGRGIGSKKMGFEKRTPLMIAAMFGSSKVVKYLIESGKVDVNRACGSDMATALHCATAGGSGSSLEAIKLLLDGSADVDCVDANGRKPVDLIVSACRMVCNSGRKAMEMLLRGDGMAGEGDLSLYLEEDQQKITASQSAKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKTTLSARDLDLEMELLGLEKNASQLQHQQQLIDEIARLSSPSYWSTDVSRSAELKASNLDDMFRSLDSSLLSQLQGTSLKTPISAQVQSPTGLQMRQNMNQLRASYPANLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVPRLPGFTTAANSAATMSSHLSDWNSPDGKLDWGMNGNDLNKLKKSASFGIRNNGIKAPTFAPSAGEPDVSWVNSLVKDVPSDSFELFGAEKRQYNLKREINEMLPSWMEQQLYAEQEQIVA 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10389301 10394441 + Maker00028426 Lcy7g0994 637826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0994 896 Gene3D - 481 543 - -
Lcy7g0994 896 Pfam Ankyrin repeats (3 copies) 287 354 IPR002110 GO:0005515(InterPro)
Lcy7g0994 896 SMART ANK_2a 287 317 IPR002110 GO:0005515(InterPro)
Lcy7g0994 896 SMART ANK_2a 322 354 IPR002110 GO:0005515(InterPro)
Lcy7g0994 896 ProSiteProfiles Ankyrin repeat region circular profile. 287 311 - -
Lcy7g0994 896 ProSiteProfiles Zinc finger C3H1-type profile. 480 507 IPR000571 GO:0046872(InterPro)
Lcy7g0994 896 MobiDBLite consensus disorder prediction 550 595 - -
Lcy7g0994 896 MobiDBLite consensus disorder prediction 63 85 - -
Lcy7g0994 896 PANTHER UNKEMPT FAMILY MEMBER 282 853 IPR045234 -
Lcy7g0994 896 ProSiteProfiles Ankyrin repeat profile. 287 311 IPR002110 GO:0005515(InterPro)
Lcy7g0994 896 MobiDBLite consensus disorder prediction 45 98 - -
Lcy7g0994 896 MobiDBLite consensus disorder prediction 544 595 - -
Lcy7g0994 896 FunFam Zinc finger CCCH domain-containing protein 66 438 506 - -
Lcy7g0994 896 Gene3D - 210 373 IPR036770 -
Lcy7g0994 896 ProSiteProfiles Ankyrin repeat profile. 322 357 IPR002110 GO:0005515(InterPro)
Lcy7g0994 896 SMART c3hfinal6 480 506 IPR000571 GO:0046872(InterPro)
Lcy7g0994 896 SMART c3hfinal6 515 538 IPR000571 GO:0046872(InterPro)
Lcy7g0994 896 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 484 505 IPR000571 GO:0046872(InterPro)
Lcy7g0994 896 SUPERFAMILY Ankyrin repeat 245 364 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0682 Lcy-Chr5:8751751 Lcy7g0994 Lcy-Chr7:10389301 1.23E-154 dispersed
Lcy6g0313 Lcy-Chr6:2946879 Lcy7g0994 Lcy-Chr7:10389301 6.20E-50 dispersed
Lcy7g0994 Lcy-Chr7:10389301 Lcy9g1994 Lcy-Chr9:44798174 1.86E-49 dispersed
Lcy7g0994 Lcy-Chr7:10389301 Lcy8g1738 Lcy-Chr8:43860671 1.90E-250 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20430 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0994 - - - 0.0