Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1000 ATGTGCGCAGTTGCAGTGCCGAAGGCGACGGCGACGACTCCTTTATTCTCATCTCCAAAGATCGCTTCACTGATCTACAAGTCGTCTTTGAATTATTGTTCTTCTTCTTCTCCTTCTTCGCCCAGATCCGTGTCCAGTCCGAGGAAGCTTCATGTTTCTGCATCTTCCCCATCGCAGCCGCAACTTCCGCCTTCTGTTTCGCCGTTGGCTGTCGATACGGTTTTGAAGAGGAAGAGGCCGGCGAGAATCGACGTTCCGCCGTCCATTGCTTTTGGATTTGGATTTGAGAAACAACCGGAGGTGATGGAGGAGGAAGGGGAAGGTTATTCGGTTTTTTGTAAAAGAGGAAGAAGACGCAGCGCCATTGAGGATCGATTCTCTGCCACCGTCGGAATTCAAGGAGATTCTCGACAGGCTTTCTTCGGAGTTTTGGACGGGCACGGCGGAGCAGAAGTGGCGGAAATCGCTGCGAAAAGAATGAGCAAGAACGTGATCGATCAAGTAACAAGAAGAACCGATTCGGAACTCGAGGAAGCAATCAAAGACGGCTATCTCGCCACCGATCGGGAAGTATCGGAGGAAGGAGTCGGCGGCGGCGCCTGTTGCGTCTCCGCATTGATTCGGAACGGAAATCTCGCAGTCTCAAACGTCGGCGATTGCCGCGCTGTGTTGAGCCGAAGGGGAAAAGCCGAAGCCCTAACCTCCGATCACCGCCCGTCGAGAGAAGACGAGAGAAATCGGATCGAAAATTCGGGCGGTTATGTAGATTATTGCCGTGGTGTGTGGAGAGTTCAAGGAACGTTGGCTGTATCGAGAGCCATTGGAGATGAGCATCTGAAACAGTGGGTGATAGCGGAGCCGGAGACGAGAGTGATGAAGATTGAGGATGATTGTGATTTCTTGATCCTTGCTTCGGATGGTCTTTGGGACAAGGTGACAAATCAGGAAGCAGTGGACATAGTACAGACTCTGTGCGGCGTAGAGATGGAAAAGCCGAAGCTCTTCTCAGCCTGCAAAGAGCTAGCCGCCTTGTCAACATCAAGAGGCTCAGTCGACGATACCAGCGTCATGATCATCAAATTGCCTTCATTTCTCTGA 1098 51.64 MCAVAVPKATATTPLFSSPKIASLIYKSSLNYCSSSSPSSPRSVSSPRKLHVSASSPSQPQLPPSVSPLAVDTVLKRKRPARIDVPPSIAFGFGFEKQPEVMEEEGEGYSVFCKRGRRRSAIEDRFSATVGIQGDSRQAFFGVLDGHGGAEVAEIAAKRMSKNVIDQVTRRTDSELEEAIKDGYLATDREVSEEGVGGGACCVSALIRNGNLAVSNVGDCRAVLSRRGKAEALTSDHRPSREDERNRIENSGGYVDYCRGVWRVQGTLAVSRAIGDEHLKQWVIAEPETRVMKIEDDCDFLILASDGLWDKVTNQEAVDIVQTLCGVEMEKPKLFSACKELAALSTSRGSVDDTSVMIIKLPSFL 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10507846 10511168 + Maker00028764 Lcy7g1000 637832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1000 365 MobiDBLite consensus disorder prediction 36 60 - -
Lcy7g1000 365 Pfam Protein phosphatase 2C 113 353 IPR001932 -
Lcy7g1000 365 PANTHER PROTEIN PHOSPHATASE 103 359 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy7g1000 365 SMART PP2C_4 100 359 IPR001932 -
Lcy7g1000 365 CDD PP2Cc 108 361 IPR001932 -
Lcy7g1000 365 ProSiteProfiles PPM-type phosphatase domain profile. 108 361 IPR001932 -
Lcy7g1000 365 MobiDBLite consensus disorder prediction 36 67 - -
Lcy7g1000 365 Gene3D - 110 364 IPR036457 -
Lcy7g1000 365 SUPERFAMILY PP2C-like 108 362 IPR036457 -
Lcy7g1000 365 FunFam probable protein phosphatase 2C 25 101 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2367 Lcy-Chr10:47252013 Lcy7g1000 Lcy-Chr7:10507846 4.06E-84 dispersed
Lcy11g0083 Lcy-Chr11:843135 Lcy7g1000 Lcy-Chr7:10507846 5.50E-127 dispersed
Lcy7g1000 Lcy-Chr7:10507846 Lcy9g1311 Lcy-Chr9:37855499 1.32E-29 dispersed
Lcy7g1000 Lcy-Chr7:10507846 Lcy11g0153 Lcy-Chr11:1691780 7.94E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1000 K17506 - csv:101208170 497.664